Tandem Repeat Analyzer

Run statistics:

Number of input sequences: 1800000

Number of analyzed sequences: 1135580

Cluster merging: No

Consensus files - fasta format:

Putative satellite (high confidence) - total 1 found

Putative satellite (low confidence) - total 3 found

rDNA - total 1 found

Documentation

For the explanation of TAREAN output see the help section

Putative satellite (high confidence)

  Cluster Genome
Proportion
[%] 		Genome
Proportion
Adjusted[%] 		Size
real 		Satellite
probability 		Consensus
length 		Consensus Graph
layout 		Kmer
analysis 		Connected
component
index C 		Pair
completeness
index
P 		Kmer
coverage 		|V| |E| Pbs
score 		Similarity
based
annotation
62 62 0.29 0.29 3243 0.821 750 
TCTTCTAGGTTTACATCGATTTAGTCCGACTATTTATACCACAAACTCCGTGGAATAAATTTATGAACGAAAACATCCGA
GCTGTAGAAAAAACTTAAGATGGAATTATTCTGCACACAAAACCGATCCATGACAATTCGAACCGTTAGAAACGTAGAAC
ATGGAAAGAGCTTCGTTTTGATAGGTTGTGGCTCCCGTAACTCCAAACGAGTCAAAAGTTATGGCCGTTTGAAGAAACGG
AAGAAAGCGACGGACCGCTCGCTGATCCGATTCGACGGTATTGGCGAAAGTCTTCGATCTCCGCGAAACGCTCGAGCATG
CTCACACTGTAGCACTCGATATTAAAGATATTATGGATCACCGAGGGAATAAATGAGGATATGGGTCAAAAGCTTGTCTA
CTGAAGCTATAGCGCAATAAATGTTCTTTTTTTACGACCGTTCCGTCTTCCTCGTTTTCCGTACCTCATTGTTTTGCTCA
TATTCATCAACACGCGCGGTCTTTTTACCAATATTACAACATCACGACAAAGTGACTTCGAGGAGAATGTTAAACGCATT
TGATACCTTAGAATTTCGAACGGCTGAGGGTGTTTTATATGATTACTTAGCCTGTAAGTAACCTACTTTTTCAGTCTGCG
AATATCTTTCGGTTTCCTGTTTTATCCAATTTTAAATCCAATTTCAATCTTTTTAGCGGAATATTATCGTGGCCTTTTTT
GATCTTCGTATATTTTTGTTTTTTTGTCGT

seqclust/clustering/clusters/dir_CL0062/CL62_tmb.png

report

0.966

0.94

0.54

3243

283000

0

0.09% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT



 
	


 

 


 
 Putative satellite (low confidence)










	

	 
	
 
		   
		Cluster  
		Genome
Proportion
[%]  		
		Genome
Proportion
Adjusted[%]  		
		Size
real  		
		Satellite
probability  		
		Consensus
length  		
		Consensus  
		Graph
layout  		
		Kmer
analysis  		
		Connected
component
index C  		
		Pair
completeness
index
P  		
		Kmer
coverage  		
		|V|  
		|E|  
		Pbs
score  		
		Similarity
based
annotation		 
	
 

 
15

15

0.680

0.680

7692

0.574

 356


AGCTTTCAGCCGTCAACGGATAGATTAATGCCCAAAAAGGACAACCCGAATCTCAATCGGGTCTCGTAAGTTTTTTACCC
TTCGTTTTTTCGACACGTGGATTTTTACGGTAAAACGGGATTACCGTGGCTGGTCTTCGATTTACCATCGCTGGAGAGTG
GTGCACCATGGTACTGTTCCGTTTCAAATCCATGCACGCATTTCTAAAAGTCGTACGGCACTGTTTCGCCATTTCGGACG
GATGTTGCACCCTGTAGATATCGATTATTCGGACGGCCATAACTTCTGGCTCGTTTAGAGTTACGGGAGCCATAACCTGT
CAAAACGAAGGCCTCGATGAGTTCTACGGCTTTGAC

seqclust/clustering/clusters/dir_CL0015/CL15_tmb.png

report

0.928

0.846

0.583

7689

5580000

0.000

0.04% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase



 

 
19

19

0.630

0.630

7144

0.543

 356


TAGAACTCACAGATACCTTCGTTTTGACTGGTTATGGCTCCCGTAACTCTAAACGAGCCAAGAGTTATGGCCCTCCGAAG
AATCGATATCCACAGGGTGCAACATCCGTCCAAAATGACGAAACAGTGCCGTACGACCTTTAGAAATGGGTGCATGGATT
TGAAACGGTGCAGTACCATGGTGCACCACTCTCCAGCGATGGTAAATCATAGACCAGCCACGGGGATCCCGTTTTACAGA
AAAAATCCACGTGACGAAAAAACGAAGGGTAAAAAACTTCCATGACCCGATTGAGGTTCGGATAGGATTTTTTGGGTATG
AAACTAACCAGTGACGGCTGAAAGCTGTCATAGCTG

seqclust/clustering/clusters/dir_CL0019/CL19_tmb.png

report

0.927

0.840

0.609

7140

5820000

0.000

0.17% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/Osser:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH



 

 
147

147

0.026

0.026

 300

0.411

2500


TTCTAGGTCTTTTGTACATTGTTCATTCATCGCATGTGCATTTACCACTGGATGATTCCACTTCTTTTGTTCGTCATAAT
TTGTCGGATGGTGCCACTTACTCTTTTCATCAACGATTGTTGGATGATGCCACTTGGTTGGTAGTTCATTAGGTTGCAGC
TTTGATGCCAAGGTAGTTTCAGTTATGATAAAAAAGAACAACACTAAAGCTAATGATGCACTATATGCTTTGGTCATGTT
TATGTGTGGTATGTTGTTCAAGAAAGAAGATGGTTTTTATAAGATTTGAAGATAAAGTTTGGAATCTTGAAGTCAATTAA
GCCATTGTAAAATAATTAATGATCTCATTTTGTTTTATCCACTTTCATATTCTGGATAAAAACATAACCTTAAAGTAGAT
AGTGTTTTAATAAGCTTTCTACAAAAAAATAACATGCAAAAGTTAATTATAATTCACCAATCGTTATGTTAATAATAGAA
GGCGGTGTTGCATATCAACTACTAATTTCAATCTAAGCTTCTTGTATCATAGGAAATATATGAAAAACCCAAATTAGTAA
AAAAAAATTAAATAAATATTGGTGTCTACTAAATTATAATAAAAATGTGTGATTGCCGATACATCCAAAAAGAAAAGTCA
AAACAGGTAGTTACGATGTAAACTGAAATGAAAAATTCTAGAATAAAAAATAGATGTCTCGTTTTGTCATATATTTTATC
CTCCTAATTTTTTTGATAATATTAGTATTGTTATCGTAACAGTATATTACTACACTATTAGCGTGTATGTGTGCAAATGT
GTATATTCGCATATTTCGATTAAAATTTACTATATTTTGATTATAAAAGACGTTTATTTTCTTGTTATGGTGTTTGGAAC
TTACACAATATCAAATGTCTATTTTTTATTTTACCACCTCAAATGTAGGTTTATCGTTTCACATCTCGTTTTCACTAAAA
CTTAAAGTTAATTGCTCGACGTCATGTATTCGCATTACTATTTAACTGTATTAAAAACCCAAGTCTAGTGTTACCAAAAA
AGAGATATTTGTATAACTCTATGGCATGCAAAAAATTTGTAGTTTGAAATGTATCCACAATTTGATTTTTATTTACATTT
TGCATAGATATAACATATTGTCAATATGTCGTTAAAACTGAAGATTTTAGTGTGGTGAAAATTAGACGCTTCTGATATAC
TAGTGTCCAAAGCCAGTCAGATATTGTTGTAGGCTTAAGGCATAATGATCTAAATCAGGGATTAAAACAATCAGAGGTCC
TTATTAGTTATTTTGAAACATTGAAAATACAGTCACAATGCAAGTTTAAATTATAGTGGCTTAAAAATAAAGCATACTCT
TTTACAATTACACAGAGTACGCTTTCATTAATCTAAAATATGACCGATTTCATTTATAAACAAAATACAATTACTTTTAT
AAACAAAATTAGAATTTTGAGGCCGATGAAAATTCAAGGCCCTTGGCGATGACTTTAGTGACATAGGGCTACTATCGGCC
ATTCCTATATCAAACATAGTTTCGAATAATACCGACTATTTGTAAATAGCAGTAAATGAGATTTGAGAAGAAATGTGTAG
ATGACTATTAAAATAAGTAACGTGCAACGAACCATCCATTTGAGAATTTGCATATGCAAAATGATTTTTAAATAACAATT
TAATAACATAATTTTTTCTAAAAAATCCATCATTCAAAAGTTTTGCATTTTGCAAGTTTATCCAACTCTAACCATCCACT
ACTAGTGTTGCAATAAATTACTATTTTGAAAAATTTTGGTTAAAAATTTGAAAATAAGAATACACAAAAATCCAAACTTC
CTACCTATATTAAACTGGAAAAGTGAATACATAGCTTAAAATAAGTTGTATAATAACAAAACAAAACATGTTTGTAACTA
TTGATCACACATCTTATTAGAAAACAATATATTTGGTTTAAGTAAAGCAGTTTTATTGGAAAATAAATTATATAAGCTTC
CTTTACTAAAATTTACTTAAATTGAGAGGTATGTATAAATTTATTAAATTTATGGAAAAACATTTAGTTTATAAATATAA
ATATCGTGGCAATACATTTATGTAAAAAGTTAATCCGAATTATGCTGACCAAACATAAATATTATCTCAATATATAAACA
TAAGTGAAATAATAGCTCCACGAATAGATTACTATCAGAAGATGTAATAATAAGTTGTAAAATGCTTTTTAAGATATTTA
ACTTAAACCATCTACAAAGATAATTCTTCCATCAAATTTATTTCATACTATAATACCATGAAAGCACATTGTATCAACTT
TAATGACTTAACATTTGATGTTAAACATTATCATTTCACCGGTGAAATAGTTGAAGCTTGATTATGCCATTTTCTTTGTT
GATACAACGATGTAGGACGATGTCATTTACTTTCTTCATAACTGGTTATTGGATGATGCATTTCTTCTTGTTCTTTTGTG
CACTGTAGTTCTTTTGTGCA

seqclust/clustering/clusters/dir_CL0147/CL147_tmb.png

report

0.917

0.840

0.786

 300

   1640

0.258




 
	


 

 


 
 Putative LTR element



not found


 
 rDNA










	

	 
	
 
		   
		Cluster  
		Genome
Proportion
[%]  		
		Genome
Proportion
Adjusted[%]  		
		Size
real  		
		Satellite
probability  		
		Consensus
length  		
		Consensus  
		Graph
layout  		
		Kmer
analysis  		
		Connected
component
index C  		
		Pair
completeness
index
P  		
		Kmer
coverage  		
		|V|  
		|E|  
		Pbs
score  		
		Similarity
based
annotation		 
	
 

 
211

211

0.011

0.011

123

0.0311

342


ACGTTATTGAAACCGTTCTGCGCGTTCGTAACGCTGCATTAGTAATCTTCCAATCCACTTTCGTACGGGTGCGATCATAC
CAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTC
CTGGGAAGTCCTCGTGTTGCACTCCTTTTTGCTTCTTCTCGTTCGCAGTCCCCTTTTAATTTTAATTTCTTTTTTTTTCA
CTTCGATCCGATTTTCTATTCGATTCCTCAACGTTGTCTTCTTTCCGTTCCTTTTTTCCGAAATTATCCGTCTTTGTTTT
TCATTTTTATCTGCGTTTTTAA

seqclust/clustering/clusters/dir_CL0211/CL211_tmb.png

report

0.764

0.732

0.437

123

999

0

46.34% 5S_rDNA/5S_rDNA



 
	


 

 


 
 Other










	

	 
	
 
		   
		Cluster  
		Genome
Proportion
[%]  		
		Genome
Proportion
Adjusted[%]  		
		Size
real  		
		Satellite
probability  		
		Consensus
length  		
		Consensus  
		Graph
layout  		
		Kmer
analysis  		
		Connected
component
index C  		
		Pair
completeness
index
P  		
		Kmer
coverage  		
		|V|  
		|E|  
		Pbs
score  		
		Similarity
based
annotation		 
	
 

 
1

1

1.200

1.200

14025

1.29e-21

 

 

seqclust/clustering/clusters/dir_CL0001/CL1_tmb.png

N/A

0.001710

0.5560

 

14025

  96400

 

0.02% organelle/plastid
0.01% organelle/mitochondria
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RT



 

 
2

2

1.100

1.100

12468

6.99e-18

 

 

seqclust/clustering/clusters/dir_CL0002/CL2_tmb.png

N/A

0.058100

0.4800

 

12468

1380000

 

0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
0.01% organelle/plastid



 

 
3

3

1.100

1.100

12355

7.64e-22

 

 

seqclust/clustering/clusters/dir_CL0003/CL3_tmb.png

N/A

0.000890

0.6000

 

12355

 345000

 

0.19% organelle/plastid
0.04% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase
0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase



 

 
4

4

1.000

1.000

11824

1.05e-14

 

 

seqclust/clustering/clusters/dir_CL0004/CL4_tmb.png

N/A

0.116000

0.4470

 

11824

1520000

 

0.31% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/nonchromo-outgroup:Ty3-RT
0.01% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.01% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
5

5

0.980

0.980

11129

9.72e-21

 

 

seqclust/clustering/clusters/dir_CL0005/CL5_tmb.png

N/A

0.005750

0.4420

 

11129

2810000

 

0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.01% Class_II/Subclass_2/Helitron:Helitron-HEL1



 

 
6

6

0.950

0.950

10805

1.00e-21

 

 

seqclust/clustering/clusters/dir_CL0006/CL6_tmb.png

N/A

0.004260

0.5810

 

10805

 243000

 

0.06% organelle/plastid
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% organelle/mitochondria
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LINE:LINE-ENDO



 

 
7

7

0.900

0.900

10222

1.06e-20

 

 

seqclust/clustering/clusters/dir_CL0007/CL7_tmb.png

N/A

0.005480

0.4090

 

10222

 901000

 

0.04% organelle/plastid
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
8

8

0.840

0.840

 9567

3.21e-23

 

 

seqclust/clustering/clusters/dir_CL0008/CL8_tmb.png

N/A

0.000732

0.7860

 

 9567

 178000

 

10.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
8.31% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
5.54% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
4.30% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
3.60% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
1.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
9

9

0.830

0.830

 9435

1.22e-17

 

 

seqclust/clustering/clusters/dir_CL0009/CL9_tmb.png

N/A

0.067300

0.5880

 

 9435

 682000

 

0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDCR
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT



 

 
10

10

0.800

0.800

 9043

1.14e-21

 

 

seqclust/clustering/clusters/dir_CL0010/CL10_tmb.png

N/A

0.001550

0.5710

 

 9043

 439000

 

0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase



 

 
11

11

0.730

0.730

 8326

5.91e-21

 

 

seqclust/clustering/clusters/dir_CL0011/CL11_tmb.png

N/A

0.008410

0.5430

 

 8326

  93600

 

0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT



 

 
12

12

0.720

0.720

 8168

6.04e-21

 

 

seqclust/clustering/clusters/dir_CL0012/CL12_tmb.png

N/A

0.000979

0.4120

 

 8168

 334000

 

0.01% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.01% organelle/plastid
0.01% Class_I/LINE:LINE-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.01% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-RT



 

 
13

13

0.720

0.720

 8149

1.48e-19

 

 

seqclust/clustering/clusters/dir_CL0013/CL13_tmb.png

N/A

0.021700

0.4840

 

 8149

 158000

 

0.23% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-INT



 

 
14

14

0.700

0.700

 7896

4.55e-19

 

 

seqclust/clustering/clusters/dir_CL0014/CL14_tmb.png

N/A

0.032200

0.3930

 

 7896

 503000

 

0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Bianca:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
0.01% Class_I/LINE:LINE-ENDO



 

 
16

16

0.670

0.670

 7660

6.53e-21

 

 

seqclust/clustering/clusters/dir_CL0016/CL16_tmb.png

N/A

0.000914

0.3970

 

 7660

 609000

 

0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT



 

 
17

17

0.670

0.670

 7609

2.34e-21

 

 

seqclust/clustering/clusters/dir_CL0017/CL17_tmb.png

N/A

0.000789

0.5140

 

 7609

 309000

 

0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.04% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Bianca:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
18

18

0.650

0.650

 7354

5.50e-19

 

 

seqclust/clustering/clusters/dir_CL0018/CL18_tmb.png

N/A

0.029000

0.3280

 

 7354

1470000

 

0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.01% organelle/mitochondria
0.01% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH



 

 
20

20

0.610

0.610

 6937

9.43e-24

 

 

seqclust/clustering/clusters/dir_CL0020/CL20_tmb.png

N/A

0.000577

0.8530

 

 6937

  89700

 

21.71% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
12.37% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
10.28% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
10.18% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
5.68% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
0.14% organelle/mitochondria
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDCR
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
21

21

0.600

0.600

 6789

8.59e-16

 

 

seqclust/clustering/clusters/dir_CL0021/CL21_tmb.png

N/A

0.119000

0.6210

 

 6789

 126000

 

0.34% organelle/mitochondria
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/Bianca:Ty1-RT
0.01% Class_I/LINE:LINE-RT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT



 

 
22

22

0.590

0.590

 6706

1.47e-21

 

 

seqclust/clustering/clusters/dir_CL0022/CL22_tmb.png

N/A

0.000447

0.5490

 

 6706

  47400

 

1.36% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.28% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.27% organelle/plastid
0.13% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.13% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.07% organelle/mitochondria
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
23

23

0.580

0.580

 6617

5.76e-22

 

 

seqclust/clustering/clusters/dir_CL0023/CL23_tmb.png

N/A

0.003930

0.6150

 

 6617

  74900

 

0.79% organelle/mitochondria
0.06% Class_I/LINE:LINE-ENDO
0.06% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.03% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT



 

 
24

24

0.580

0.580

 6546

2.61e-21

 

 

seqclust/clustering/clusters/dir_CL0024/CL24_tmb.png

N/A

0.002290

0.4960

 

 6546

 209000

 

0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.05% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH



 

 
25

25

0.570

0.570

 6438

4.45e-21

 

 

seqclust/clustering/clusters/dir_CL0025/CL25_tmb.png

N/A

0.014800

0.5760

 

 6438

 385000

 

0.20% organelle/plastid
0.05% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LINE:LINE-ENDO
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
26

26

0.570

0.570

 6420

7.13e-19

 

 

seqclust/clustering/clusters/dir_CL0026/CL26_tmb.png

N/A

0.038500

0.4660

 

 6420

1550000

 

0.03% Class_I/LTR/Ty1_copia/Bryco:Ty1-GAG
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
27

27

0.560

0.560

 6333

4.29e-21

 

 

seqclust/clustering/clusters/dir_CL0027/CL27_tmb.png

N/A

0.003320

0.4520

 

 6333

 948000

 

0.03% Class_I/LINE:LINE-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-RT



 

 
28

28

0.550

0.550

 6284

1.00e-20

 

 

seqclust/clustering/clusters/dir_CL0028/CL28_tmb.png

N/A

0.008430

0.4250

 

 6284

1070000

 

0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.02% Class_I/LINE:LINE-ENDO
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT



 

 
29

29

0.550

0.550

 6262

8.39e-20

 

 

seqclust/clustering/clusters/dir_CL0029/CL29_tmb.png

N/A

0.017900

0.5530

 

 6262

 830000

 

0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT



 

 
30

30

0.550

0.550

 6236

3.21e-21

 

 

seqclust/clustering/clusters/dir_CL0030/CL30_tmb.png

N/A

0.004170

0.4840

 

 6236

  67700

 

0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% organelle/plastid
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.02% Class_II/Subclass_2/Helitron:Helitron-HEL2



 

 
31

31

0.540

0.540

 6094

2.38e-14

 

 

seqclust/clustering/clusters/dir_CL0031/CL31_tmb.png

N/A

0.131000

0.4330

 

 6094

 442000

 

0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH



 

 
32

32

0.520

0.520

 5954

4.29e-21

 

 

seqclust/clustering/clusters/dir_CL0032/CL32_tmb.png

N/A

0.000840

0.4490

 

 5954

 106000

 

0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.02% organelle/plastid



 

 
33

33

0.510

0.510

 5839

1.66e-21

 

 

seqclust/clustering/clusters/dir_CL0033/CL33_tmb.png

N/A

0.000685

0.5430

 

 5839

 108000

 

0.03% organelle/mitochondria
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.02% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.02% organelle/plastid



 

 
34

34

0.480

0.480

 5504

1.76e-23

 

 

seqclust/clustering/clusters/dir_CL0034/CL34_tmb.png

N/A

0.002360

0.8180

 

 5504

 199000

 

5.52% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.24% Class_I/LINE:LINE-RT
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG



 

 
35

35

0.480

0.480

 5451

1.51e-20

 

 

seqclust/clustering/clusters/dir_CL0035/CL35_tmb.png

N/A

0.003850

0.2310

 

 5451

 681000

 

0.04% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.02% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase



 

 
36

36

0.480

0.480

 5441

1.95e-22

 

 

seqclust/clustering/clusters/dir_CL0036/CL36_tmb.png

N/A

0.001470

0.6930

 

 5441

 209000

 

0.07% organelle/plastid
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.02% Class_I/LINE:LINE-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG



 

 
37

37

0.480

0.480

 5409

6.04e-21

 

 

seqclust/clustering/clusters/dir_CL0037/CL37_tmb.png

N/A

0.001110

0.4150

 

 5409

  82700

 

0.61% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.26% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.15% organelle/plastid
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
0.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT



 

 
38

38

0.450

0.450

 5166

3.55e-21

 

 

seqclust/clustering/clusters/dir_CL0038/CL38_tmb.png

N/A

0.001550

0.4680

 

 5166

 145000

 

0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
39

39

0.450

0.450

 5063

5.57e-21

 

 

seqclust/clustering/clusters/dir_CL0039/CL39_tmb.png

N/A

0.000593

0.4150

 

 5063

  68400

 

3.52% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.47% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.22% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.02% Class_I/LINE:LINE-ENDO
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
0.02% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.02% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.02% Class_I/pararetrovirus:PARA-RT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT



 

 
40

40

0.440

0.440

 5034

9.41e-20

 

 

seqclust/clustering/clusters/dir_CL0040/CL40_tmb.png

N/A

0.033800

0.6050

 

 5034

  51400

 

11.60% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
2.68% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
2.50% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT



 

 
41

41

0.430

0.430

 4895

6.12e-24

 

 

seqclust/clustering/clusters/dir_CL0041/CL41_tmb.png

N/A

0.000613

0.8700

 

 4895

 125000

 

11.58% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
10.99% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
9.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
7.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
5.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
0.39% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.02% 45S_rDNA/25S_rDNA
0.02% Class_I/LINE:LINE-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT



 

 
42

42

0.420

0.420

 4778

6.53e-21

 

 

seqclust/clustering/clusters/dir_CL0042/CL42_tmb.png

N/A

0.004600

0.4040

 

 4778

 226000

 

9.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
43

43

0.410

0.410

 4679

1.17e-22

 

 

seqclust/clustering/clusters/dir_CL0043/CL43_tmb.png

N/A

0.000855

0.7240

 

 4679

 198000

 

23.51% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
14.21% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
6.24% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.51% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.41% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.21% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.13% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.04% Class_I/pararetrovirus:PARA-PROT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT



 

 
44

44

0.410

0.410

 4615

8.27e-21

 

 

seqclust/clustering/clusters/dir_CL0044/CL44_tmb.png

N/A

0.007150

0.4760

 

 4615

 120000

 

0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.04% Class_I/LINE:LINE-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.02% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.02% Class_I/LTR/Ty1_copia/Bianca:Ty1-GAG



 

 
45

45

0.400

0.400

 4542

2.64e-13

 

 

seqclust/clustering/clusters/dir_CL0045/CL45_tmb.png

N/A

0.196000

0.6780

 

 4542

  80600

 

0.07% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.04% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT



 

 
46

46

0.400

0.400

 4538

8.75e-22

 

 

seqclust/clustering/clusters/dir_CL0046/CL46_tmb.png

N/A

0.002200

0.5910

 

 4538

  41800

 

4.89% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.11% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT



 

 
47

47

0.400

0.400

 4528

3.90e-23

 

 

seqclust/clustering/clusters/dir_CL0047/CL47_tmb.png

N/A

0.000221

0.7780

 

 4528

  37500

 

0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT



 

 
48

48

0.390

0.390

 4458

6.37e-04

 

 

seqclust/clustering/clusters/dir_CL0048/CL48_tmb.png

N/A

0.584000

0.6260

 

 4458

  77500

 

0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.02% Class_I/LINE:LINE-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
49

49

0.390

0.390

 4445

8.75e-22

 

 

seqclust/clustering/clusters/dir_CL0049/CL49_tmb.png

N/A

0.003150

0.5910

 

 4445

 254000

 




 

 
50

50

0.390

0.390

 4441

4.45e-21

 

 

seqclust/clustering/clusters/dir_CL0050/CL50_tmb.png

N/A

0.012200

0.5790

 

 4441

  33300

 

6.60% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.34% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_II/Subclass_1/TIR/Tc1_Mariner:Mariner-TPase
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
51

51

0.380

0.380

 4343

9.81e-23

 

 

seqclust/clustering/clusters/dir_CL0051/CL51_tmb.png

N/A

0.000230

0.7330

 

 4343

  31800

 

30.83% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
20.68% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
12.09% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
5.13% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
3.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.62% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.53% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.25% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT
0.09% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Bianca:Ty1-RT
0.02% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.02% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.02% organelle/plastid



 

 
52

52

0.370

0.370

 4214

1.17e-23

 

 

seqclust/clustering/clusters/dir_CL0052/CL52_tmb.png

N/A

0.000712

0.8430

 

 4214

 233000

 

25.49% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
13.48% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
13.19% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
5.58% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
4.46% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.55% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.47% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.05% Class_I/pararetrovirus:PARA-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RT



 

 
53

53

0.340

0.340

 3901

4.98e-22

 

 

seqclust/clustering/clusters/dir_CL0053/CL53_tmb.png

N/A

0.001030

0.6350

 

 3901

  97500

 

4.13% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
2.28% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.05% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.03% organelle/plastid
0.03% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT



 

 
54

54

0.340

0.340

 3883

3.21e-23

 

 

seqclust/clustering/clusters/dir_CL0054/CL54_tmb.png

N/A

0.000258

0.7940

 

 3883

  71800

 

22.30% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
11.95% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
10.97% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
6.18% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
5.74% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
3.32% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.26% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.23% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.23% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.05% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.03% Class_I/LINE:LINE-ENDO
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH



 

 
55

55

0.340

0.340

 3817

1.17e-22

 

 

seqclust/clustering/clusters/dir_CL0055/CL55_tmb.png

N/A

0.002100

0.7200

 

 3817

 250000

 

53.97% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
25.91% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.50% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.18% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT



 

 
56

56

0.330

0.330

 3795

1.03e-20

 

 

seqclust/clustering/clusters/dir_CL0056/CL56_tmb.png

N/A

0.004480

0.3320

 

 3795

 389000

 

0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.03% Class_I/LINE:LINE-RT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT



 

 
57

57

0.330

0.330

 3781

1.08e-18

 

 

seqclust/clustering/clusters/dir_CL0057/CL57_tmb.png

N/A

0.074600

0.7580

 

 3781

  90500

 

0.03% Class_I/pararetrovirus:PARA-RH



 

 
58

58

0.310

0.310

 3550

6.10e-16

 

 

seqclust/clustering/clusters/dir_CL0058/CL58_tmb.png

N/A

0.129000

0.6860

 

 3550

  26100

 

17.13% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
9.18% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
7.49% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
5.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
3.38% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
0.23% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.11% organelle/mitochondria
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatI:Ty3-INT



 

 
59

59

0.310

0.310

 3480

5.76e-22

 

 

seqclust/clustering/clusters/dir_CL0059/CL59_tmb.png

N/A

0.000862

0.6160

 

 3480

  21200

 

0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH



 

 
60

60

0.290

0.290

 3284

1.09e-16

 

 

seqclust/clustering/clusters/dir_CL0060/CL60_tmb.png

N/A

0.091700

0.5970

 

 3284

 115000

 

0.09% organelle/plastid
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.06% Class_I/LINE:LINE-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII



 

 
61

61

0.290

0.290

 3276

1.44e-23

 

 

seqclust/clustering/clusters/dir_CL0061/CL61_tmb.png

N/A

0.000305

0.8280

 

 3276

  30200

 

0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
63

63

0.280

0.280

 3167

6.84e-23

 

 

seqclust/clustering/clusters/dir_CL0063/CL63_tmb.png

N/A

0.000316

0.7520

 

 3167

  85400

 

49.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
1.52% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.44% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.22% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT



 

 
64

64

0.280

0.280

 3151

2.70e-22

 

 

seqclust/clustering/clusters/dir_CL0064/CL64_tmb.png

N/A

0.001270

0.6740

 

 3151

  41300

 

2.92% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
1.84% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.03% organelle/plastid
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
65

65

0.280

0.280

 3129

2.64e-23

 

 

seqclust/clustering/clusters/dir_CL0065/CL65_tmb.png

N/A

0.000320

0.7970

 

 3129

  48100

 

25.82% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
16.46% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
11.76% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
6.04% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
3.00% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.86% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.42% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.32% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.22% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.06% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
66

66

0.270

0.270

 3092

8.21e-23

 

 

seqclust/clustering/clusters/dir_CL0066/CL66_tmb.png

N/A

0.000323

0.7350

 

 3092

  21200

 

21.64% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.03% Class_I/LINE:LINE-ENDO



 

 
67

67

0.260

0.260

 2989

7.64e-22

 

 

seqclust/clustering/clusters/dir_CL0067/CL67_tmb.png

N/A

0.000335

0.6010

 

 2989

  12600

 

14.85% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
7.46% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
6.96% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
2.81% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
2.38% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
1.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.54% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.40% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.27% Class_I/pararetrovirus:PARA-RT
0.23% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.13% organelle/plastid
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.03% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.03% Class_I/LTR/Ty1_copia/Bianca:Ty1-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT



 

 
68

68

0.260

0.260

 2947

1.09e-20

 

 

seqclust/clustering/clusters/dir_CL0068/CL68_tmb.png

N/A

0.005430

0.4040

 

 2947

  18600

 

0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
0.03% organelle/plastid
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RT



 

 
69

69

0.260

0.260

 2933

1.95e-22

 

 

seqclust/clustering/clusters/dir_CL0069/CL69_tmb.png

N/A

0.003410

0.6870

 

 2933

  83300

 

0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT



 

 
70

70

0.250

0.250

 2876

3.22e-20

 

 

seqclust/clustering/clusters/dir_CL0070/CL70_tmb.png

N/A

0.016300

0.6440

 

 2876

  19400

 

0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% organelle/plastid
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-INT



 

 
71

71

0.250

0.250

 2834

6.10e-16

 

 

seqclust/clustering/clusters/dir_CL0071/CL71_tmb.png

N/A

0.129000

0.6880

 

 2834

  80900

 

9.63% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
5.96% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
2.54% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.28% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.25% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT



 

 
72

72

0.230

0.230

 2643

5.67e-20

 

 

seqclust/clustering/clusters/dir_CL0072/CL72_tmb.png

N/A

0.016300

0.5900

 

 2643

  63000

 

0.04% organelle/plastid



 

 
73

73

0.230

0.230

 2636

2.34e-21

 

 

seqclust/clustering/clusters/dir_CL0073/CL73_tmb.png

N/A

0.001140

0.5090

 

 2636

  70100

 

10.89% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.08% Class_I/LTR/Ty1_copia/Bryco:Ty1-GAG
0.08% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
0.08% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.04% organelle/plastid
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT



 

 
74

74

0.230

0.230

 2604

7.54e-17

 

 

seqclust/clustering/clusters/dir_CL0074/CL74_tmb.png

N/A

0.082600

0.1540

 

 2604

 218000

 

0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT



 

 
75

75

0.230

0.230

 2600

2.34e-21

 

 

seqclust/clustering/clusters/dir_CL0075/CL75_tmb.png

N/A

0.003460

0.5080

 

 2600

 116000

 

5.73% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.69% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
0.04% organelle/plastid
0.04% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.04% Class_I/LINE:LINE-RT
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT



 

 
76

76

0.220

0.220

 2552

1.66e-21

 

 

seqclust/clustering/clusters/dir_CL0076/CL76_tmb.png

N/A

0.000392

0.5410

 

 2552

  14500

 

0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT



 

 
77

77

0.220

0.220

 2498

4.71e-23

 

 

seqclust/clustering/clusters/dir_CL0077/CL77_tmb.png

N/A

0.001200

0.7700

 

 2498

  90400

 

42.63% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.08% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH



 

 
78

78

0.210

0.210

 2426

1.78e-12

 

 

seqclust/clustering/clusters/dir_CL0078/CL78_tmb.png

N/A

0.232000

0.7470

 

 2426

  47600

 

0.04% Class_I/LINE:LINE-ENDO



 

 
79

79

0.210

0.210

 2372

6.70e-21

 

 

seqclust/clustering/clusters/dir_CL0079/CL79_tmb.png

N/A

0.010500

0.5210

 

 2372

  74300

 

0.93% organelle/mitochondria



 

 
80

80

0.200

0.200

 2262

1.57e-20

 

 

seqclust/clustering/clusters/dir_CL0080/CL80_tmb.png

N/A

0.001330

0.2060

 

 2262

  29100

 

0.04% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.04% organelle/plastid
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.04% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT



 

 
81

81

0.200

0.200

 2246

2.16e-23

 

 

seqclust/clustering/clusters/dir_CL0081/CL81_tmb.png

N/A

0.000445

0.8080

 

 2246

  28100

 

17.72% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
11.26% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
9.44% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
3.87% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
2.58% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG
0.09% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT



 

 
82

82

0.200

0.200

 2227

2.49e-24

 

 

seqclust/clustering/clusters/dir_CL0082/CL82_tmb.png

N/A

0.000449

0.9100

 

 2227

  57200

 

52.85% 45S_rDNA/25S_rDNA
34.44% 45S_rDNA/18S_rDNA
4.18% 45S_rDNA/5.8S_rDNA
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT



 

 
83

83

0.190

0.190

 2114

3.16e-22

 

 

seqclust/clustering/clusters/dir_CL0083/CL83_tmb.png

N/A

0.000473

0.6610

 

 2114

  33900

 

10.97% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.05% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.05% organelle/plastid



 

 
84

84

0.180

0.180

 1993

1.66e-21

 

 

seqclust/clustering/clusters/dir_CL0084/CL84_tmb.png

N/A

0.001510

0.5400

 

 1993

  14100

 

0.15% organelle/plastid



 

 
85

85

0.170

0.170

 1978

1.62e-15

 

 

seqclust/clustering/clusters/dir_CL0085/CL85_tmb.png

N/A

0.139000

0.6780

 

 1978

  26300

 

22.55% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.15% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT



 

 
86

86

0.170

0.170

 1971

1.95e-21

 

 

seqclust/clustering/clusters/dir_CL0086/CL86_tmb.png

N/A

0.006090

0.6700

 

 1971

  75300

 

8.88% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
87

87

0.170

0.170

 1952

1.18e-06

 

 

seqclust/clustering/clusters/dir_CL0087/CL87_tmb.png

N/A

0.447000

0.8860

 

 1952

  59700

 

7.07% 45S_rDNA/25S_rDNA
0.05% organelle/mitochondria
0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-RT



 

 
88

88

0.170

0.170

 1898

8.75e-22

 

 

seqclust/clustering/clusters/dir_CL0088/CL88_tmb.png

N/A

0.000527

0.5950

 

 1898

   8790

 

27.45% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
12.75% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
11.49% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
5.16% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
3.48% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.84% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.32% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.16% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.11% organelle/mitochondria
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.05% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.05% Class_I/pararetrovirus:PARA-RT



 

 
89

89

0.170

0.170

 1893

6.64e-22

 

 

seqclust/clustering/clusters/dir_CL0089/CL89_tmb.png

N/A

0.002110

0.6070

 

 1893

  31400

 




 

 
90

90

0.150

0.150

 1710

8.64e-21

 

 

seqclust/clustering/clusters/dir_CL0090/CL90_tmb.png

N/A

0.000585

0.3600

 

 1710

  12200

 

0.18% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.06% organelle/plastid
0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-RT



 

 
91

91

0.150

0.150

 1670

8.21e-23

 

 

seqclust/clustering/clusters/dir_CL0091/CL91_tmb.png

N/A

0.001800

0.7360

 

 1670

  17500

 

0.12% organelle/plastid
0.06% organelle/mitochondria
0.06% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.06% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.06% Class_I/LTR/Ty1_copia/TAR:Ty1-INT



 

 
92

92

0.150

0.150

 1670

3.55e-21

 

 

seqclust/clustering/clusters/dir_CL0092/CL92_tmb.png

N/A

0.000599

0.4700

 

 1670

   6750

 

10.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.06% Class_I/LINE:LINE-RT



 

 
93

93

0.140

0.140

 1639

1.47e-21

 

 

seqclust/clustering/clusters/dir_CL0093/CL93_tmb.png

N/A

0.000610

0.5540

 

 1639

   9040

 

12.32% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT



 

 
94

94

0.130

0.130

 1513

3.13e-24

 

 

seqclust/clustering/clusters/dir_CL0094/CL94_tmb.png

N/A

0.000661

0.9030

 

 1513

  10400

 

99.74% organelle/plastid
0.20% organelle/mitochondria
0.20% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT



 

 
95

95

0.130

0.130

 1509

1.29e-21

 

 

seqclust/clustering/clusters/dir_CL0095/CL95_tmb.png

N/A

0.000663

0.5640

 

 1509

   7410

 

0.20% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.07% organelle/plastid



 

 
96

96

0.120

0.120

 1341

7.04e-21

 

 

seqclust/clustering/clusters/dir_CL0096/CL96_tmb.png

N/A

0.002240

0.3880

 

 1341

  26400

 

0.07% Class_II/Subclass_2/Helitron:Helitron-HEL2



 

 
97

97

0.110

0.110

 1304

1.51e-20

 

 

seqclust/clustering/clusters/dir_CL0097/CL97_tmb.png

N/A

0.000767

0.2270

 

 1304

   3120

 

0.08% organelle/mitochondria



 

 
98

98

0.110

0.110

 1262

5.57e-21

 

 

seqclust/clustering/clusters/dir_CL0098/CL98_tmb.png

N/A

0.000792

0.4180

 

 1262

   3650

 

1.03% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.08% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.08% organelle/plastid
0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.08% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase



 

 
99

99

0.110

0.110

 1255

4.71e-23

 

 

seqclust/clustering/clusters/dir_CL0099/CL99_tmb.png

N/A

0.000797

0.7650

 

 1255

  13400

 

7.33% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT



 

 
100

100

0.100

0.100

 1172

1.95e-22

 

 

seqclust/clustering/clusters/dir_CL0100/CL100_tmb.png

N/A

0.000853

0.6890

 

 1172

   6120

 

16.72% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
13.91% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
7.42% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
6.48% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
3.84% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.09% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.09% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG



 

 
101

101

0.099

0.099

 1129

6.64e-22

 

 

seqclust/clustering/clusters/dir_CL0101/CL101_tmb.png

N/A

0.000886

0.6110

 

 1129

   7490

 

0.09% Class_I/LINE:LINE-RT



 

 
102

102

0.091

0.091

 1039

2.64e-23

 

 

seqclust/clustering/clusters/dir_CL0102/CL102_tmb.png

N/A

0.000962

0.8040

 

 1039

   7900

 

33.59% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
22.14% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
16.65% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
3.66% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
3.56% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.19% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.10% Class_I/LTR/Ty1_copia/Ale:Ty1-RH



 

 
103

103

0.085

0.085

  964

3.21e-21

 

 

seqclust/clustering/clusters/dir_CL0103/CL103_tmb.png

N/A

0.001040

0.4830

 

  964

   5350

 

0.10% organelle/plastid



 

 
104

104

0.083

0.083

  941

1.65e-22

 

 

seqclust/clustering/clusters/dir_CL0104/CL104_tmb.png

N/A

0.001060

0.7050

 

  941

   3900

 




 

 
105

105

0.080

0.080

  913

1.48e-16

 

 

seqclust/clustering/clusters/dir_CL0105/CL105_tmb.png

N/A

0.080000

0.4610

 

  913

   9040

 

0.44% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.11% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase



 

 
106

106

0.080

0.080

  909

1.86e-21

 

 

seqclust/clustering/clusters/dir_CL0106/CL106_tmb.png

N/A

0.001100

0.5280

 

  909

   4690

 

3.41% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.44% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
0.33% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-INT
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT



 

 
107

107

0.078

0.078

  885

3.91e-21

 

 

seqclust/clustering/clusters/dir_CL0107/CL107_tmb.png

N/A

0.001130

0.4630

 

  885

   4460

 

0.11% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT



 

 
108

108

0.076

0.076

  861

1.05e-15

 

 

seqclust/clustering/clusters/dir_CL0108/CL108_tmb.png

N/A

0.136000

0.7120

 

  861

   6140

 

4.88% Class_I/LTR/Ty1_copia/Bianca:Ty1-RH
0.23% Class_II/Subclass_1/TIR/hAT:hAT-TPase



 

 
109

109

0.074

0.074

  845

4.91e-24

 

 

seqclust/clustering/clusters/dir_CL0109/CL109_tmb.png

N/A

0.001180

0.8820

 

  845

   6330

 

100.00% organelle/plastid
0.12% Class_I/LTR/Ty1_copia/Ale:Ty1-RT



 

 
110

110

0.074

0.074

  835

4.98e-22

 

 

seqclust/clustering/clusters/dir_CL0110/CL110_tmb.png

N/A

0.001200

0.6340

 

  835

   3050

 

22.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
18.32% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
10.18% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
7.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
2.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.36% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.24% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
0.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH



 

 
111

111

0.073

0.073

  833

1.00e-21

 

 

seqclust/clustering/clusters/dir_CL0111/CL111_tmb.png

N/A

0.001200

0.5810

 

  833

   4400

 

10.08% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH



 

 
112

112

0.071

0.071

  809

6.12e-24

 

 

seqclust/clustering/clusters/dir_CL0112/CL112_tmb.png

N/A

0.001240

0.8680

 

  809

   6340

 

99.51% organelle/plastid
0.49% organelle/mitochondria



 

 
113

113

0.061

0.061

  698

1.29e-21

 

 

seqclust/clustering/clusters/dir_CL0113/CL113_tmb.png

N/A

0.001430

0.5580

 

  698

   2700

 

32.38% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
9.31% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
3.30% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
2.87% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
2.15% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.57% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.57% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.43% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.14% Class_I/pararetrovirus:PARA-RT



 

 
114

114

0.060

0.060

  676

1.46e-20

 

 

seqclust/clustering/clusters/dir_CL0114/CL114_tmb.png

N/A

0.001480

0.0816

 

  676

   5220

 




 

 
115

115

0.059

0.059

  667

5.69e-23

 

 

seqclust/clustering/clusters/dir_CL0115/CL115_tmb.png

N/A

0.001500

0.7550

 

  667

   3580

 

17.84% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
14.09% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
8.25% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
3.45% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
3.30% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG
0.45% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.30% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.15% organelle/mitochondria
0.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/nonchromo-outgroup:Ty3-INT
0.15% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH



 

 
116

116

0.056

0.056

  636

9.75e-21

 

 

seqclust/clustering/clusters/dir_CL0116/CL116_tmb.png

N/A

0.001570

0.3390

 

  636

   2000

 




 

 
117

117

0.055

0.055

  623

4.80e-21

 

 

seqclust/clustering/clusters/dir_CL0117/CL117_tmb.png

N/A

0.012800

0.5690

 

  623

   3620

 

0.16% organelle/plastid



 

 
118

118

0.054

0.054

  614

1.72e-11

 

 

seqclust/clustering/clusters/dir_CL0118/CL118_tmb.png

N/A

0.231000

0.5350

 

  614

   8940

 




 

 
119

119

0.054

0.054

  611

9.20e-21

 

 

seqclust/clustering/clusters/dir_CL0119/CL119_tmb.png

N/A

0.001640

0.3490

 

  611

   2750

 

0.49% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.16% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH



 

 
120

120

0.052

0.052

  591

4.91e-24

 

 

seqclust/clustering/clusters/dir_CL0120/CL120_tmb.png

N/A

0.001690

0.8760

 

  591

   2580

 

99.15% organelle/plastid
0.17% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII



 

 
121

121

0.048

0.048

  547

3.90e-23

 

 

seqclust/clustering/clusters/dir_CL0121/CL121_tmb.png

N/A

0.001830

0.7820

 

  547

   7630

 




 

 
122

122

0.047

0.047

  532

5.76e-22

 

 

seqclust/clustering/clusters/dir_CL0122/CL122_tmb.png

N/A

0.001880

0.6170

 

  532

   1590

 

0.19% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.19% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG



 

 
123

123

0.046

0.046

  519

7.04e-21

 

 

seqclust/clustering/clusters/dir_CL0123/CL123_tmb.png

N/A

0.001930

0.3910

 

  519

   6000

 




 

 
124

124

0.045

0.045

  514

1.14e-20

 

 

seqclust/clustering/clusters/dir_CL0124/CL124_tmb.png

N/A

0.001950

0.3150

 

  514

   1500

 




 

 
125

125

0.044

0.044

  501

9.20e-21

 

 

seqclust/clustering/clusters/dir_CL0125/CL125_tmb.png

N/A

0.002000

0.3540

 

  501

   1620

 




 

 
126

126

0.042

0.042

  478

1.72e-19

 

 

seqclust/clustering/clusters/dir_CL0126/CL126_tmb.png

N/A

0.041800

0.6370

 

  478

   5790

 




 

 
127

127

0.040

0.040

  450

2.49e-24

 

 

seqclust/clustering/clusters/dir_CL0127/CL127_tmb.png

N/A

0.002220

0.9070

 

  450

   1990

 

92.22% organelle/plastid
0.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
128

128

0.039

0.039

  442

1.63e-20

 

 

seqclust/clustering/clusters/dir_CL0128/CL128_tmb.png

N/A

0.002260

0.1720

 

  442

   1130

 




 

 
129

129

0.037

0.037

  423

4.11e-21

 

 

seqclust/clustering/clusters/dir_CL0129/CL129_tmb.png

N/A

0.007090

0.5900

 

  423

   6160

 




 

 
130

130

0.037

0.037

  416

1.20e-20

 

 

seqclust/clustering/clusters/dir_CL0130/CL130_tmb.png

N/A

0.002400

0.3040

 

  416

   3500

 




 

 
131

131

0.036

0.036

  414

1.62e-20

 

 

seqclust/clustering/clusters/dir_CL0131/CL131_tmb.png

N/A

0.002420

0.1370

 

  414

    737

 




 

 
132

132

0.035

0.035

  403

1.17e-23

 

 

seqclust/clustering/clusters/dir_CL0132/CL132_tmb.png

N/A

0.002480

0.8400

 

  403

   1870

 

93.55% organelle/plastid
2.98% organelle/mitochondria



 

 
133

133

0.034

0.034

  387

1.39e-22

 

 

seqclust/clustering/clusters/dir_CL0133/CL133_tmb.png

N/A

0.002580

0.7120

 

  387

   2720

 




 

 
134

134

0.032

0.032

  366

1.62e-20

 

 

seqclust/clustering/clusters/dir_CL0134/CL134_tmb.png

N/A

0.002730

0.1770

 

  366

   1180

 

0.27% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT



 

 
135

135

0.032

0.032

  366

2.90e-21

 

 

seqclust/clustering/clusters/dir_CL0135/CL135_tmb.png

N/A

0.002730

0.4880

 

  366

    796

 




 

 
136

136

0.031

0.031

  352

1.35e-20

 

 

seqclust/clustering/clusters/dir_CL0136/CL136_tmb.png

N/A

0.002840

0.2660

 

  352

   2220

 




 

 
137

137

0.031

0.031

  350

6.12e-24

 

 

seqclust/clustering/clusters/dir_CL0137/CL137_tmb.png

N/A

0.002860

0.8720

 

  350

   1630

 

15.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
8.57% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
7.71% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
7.71% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH



 

 
138

138

0.031

0.031

  349

9.81e-23

 

 

seqclust/clustering/clusters/dir_CL0138/CL138_tmb.png

N/A

0.002870

0.7280

 

  349

    981

 




 

 
139

139

0.030

0.030

  346

1.57e-20

 

 

seqclust/clustering/clusters/dir_CL0139/CL139_tmb.png

N/A

0.002890

0.2140

 

  346

   3210

 




 

 
140

140

0.030

0.030

  345

4.69e-21

 

 

seqclust/clustering/clusters/dir_CL0140/CL140_tmb.png

N/A

0.002900

0.4380

 

  345

    979

 

8.41% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII



 

 
141

141

0.030

0.030

  343

5.57e-21

 

 

seqclust/clustering/clusters/dir_CL0141/CL141_tmb.png

N/A

0.002920

0.4170

 

  343

   1270

 

0.29% Class_I/LINE:LINE-ENDO



 

 
142

142

0.028

0.028

  318

1.63e-20

 

 

seqclust/clustering/clusters/dir_CL0142/CL142_tmb.png

N/A

0.003140

0.1480

 

  318

    519

 

0.31% Class_I/LTR/Ty1_copia/Ale:Ty1-RT



 

 
143

143

0.028

0.028

  317

1.65e-22

 

 

seqclust/clustering/clusters/dir_CL0143/CL143_tmb.png

N/A

0.003150

0.7040

 

  317

   1220

 

41.64% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
27.13% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
6.31% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.63% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH



 

 
144

144

0.027

0.027

  309

4.29e-21

 

 

seqclust/clustering/clusters/dir_CL0144/CL144_tmb.png

N/A

0.003240

0.4510

 

  309

    813

 

0.32% Class_I/LTR/Ty1_copia/TAR:Ty1-INT



 

 
145

145

0.027

0.027

  305

1.44e-20

 

 

seqclust/clustering/clusters/dir_CL0145/CL145_tmb.png

N/A

0.003280

0.2500

 

  305

    798

 




 

 
146

146

0.027

0.027

  302

7.04e-21

 

 

seqclust/clustering/clusters/dir_CL0146/CL146_tmb.png

N/A

0.003310

0.3850

 

  302

   1320

 




 

 
148

148

0.026

0.026

  297

1.35e-20

 

 

seqclust/clustering/clusters/dir_CL0148/CL148_tmb.png

N/A

0.003370

0.2750

 

  297

    619

 

0.34% Class_I/pararetrovirus:PARA-PROT
0.34% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH



 

 
149

149

0.025

0.025

  280

3.16e-22

 

 

seqclust/clustering/clusters/dir_CL0149/CL149_tmb.png

N/A

0.003570

0.6570

 

  280

   1250

 

10.71% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
3.57% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
1.43% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.36% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT



 

 
150

150

0.025

0.025

  280

6.43e-17

 

 

seqclust/clustering/clusters/dir_CL0150/CL150_tmb.png

N/A

0.092900

0.6280

 

  280

   1320

 




 

 
151

151

0.023

0.023

  259

8.64e-21

 

 

seqclust/clustering/clusters/dir_CL0151/CL151_tmb.png

N/A

0.003860

0.3630

 

  259

    819

 




 

 
152

152

0.022

0.022

  250

9.02e-21

 

 

seqclust/clustering/clusters/dir_CL0152/CL152_tmb.png

N/A

0.012000

0.4620

 

  250

    843

 




 

 
153

153

0.022

0.022

  249

1.62e-20

 

 

seqclust/clustering/clusters/dir_CL0153/CL153_tmb.png

N/A

0.004020

0.1420

 

  249

    378

 




 

 
154

154

0.022

0.022

  246

1.60e-20

 

 

seqclust/clustering/clusters/dir_CL0154/CL154_tmb.png

N/A

0.004070

0.1340

 

  246

    425

 

94.72% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.81% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.41% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT



 

 
155

155

0.021

0.021

  240

1.63e-20

 

 

seqclust/clustering/clusters/dir_CL0155/CL155_tmb.png

N/A

0.004170

0.1540

 

  240

    569

 




 

 
156

156

0.021

0.021

  234

1.57e-20

 

 

seqclust/clustering/clusters/dir_CL0156/CL156_tmb.png

N/A

0.004270

0.2060

 

  234

    899

 




 

 
157

157

0.021

0.021

  234

1.62e-20

 

 

seqclust/clustering/clusters/dir_CL0157/CL157_tmb.png

N/A

0.004270

0.1760

 

  234

    368

 




 

 
158

158

0.020

0.020

  232

6.53e-21

 

 

seqclust/clustering/clusters/dir_CL0158/CL158_tmb.png

N/A

0.004310

0.3980

 

  232

    666

 




 

 
159

159

0.019

0.019

  220

3.91e-21

 

 

seqclust/clustering/clusters/dir_CL0159/CL159_tmb.png

N/A

0.004550

0.4570

 

  220

   2860

 




 

 
160

160

0.019

0.019

  217

1.40e-20

 

 

seqclust/clustering/clusters/dir_CL0160/CL160_tmb.png

N/A

0.004610

0.2620

 

  217

    420

 




 

 
161

161

0.019

0.019

  216

1.25e-20

 

 

seqclust/clustering/clusters/dir_CL0161/CL161_tmb.png

N/A

0.004630

0.2930

 

  216

   3830

 




 

 
162

162

0.019

0.019

  216

9.43e-24

 

 

seqclust/clustering/clusters/dir_CL0162/CL162_tmb.png

N/A

0.004630

0.8460

 

  216

    887

 

88.89% organelle/plastid
0.46% organelle/mitochondria



 

 
163

163

0.019

0.019

  214

5.76e-22

 

 

seqclust/clustering/clusters/dir_CL0163/CL163_tmb.png

N/A

0.004670

0.6210

 

  214

    631

 

16.82% Class_I/LTR/Ty1_copia/Bianca:Ty1-INT
12.15% Class_I/LTR/Ty1_copia/Bianca:Ty1-PROT
9.81% Class_I/LTR/Ty1_copia/Bianca:Ty1-GAG



 

 
164

164

0.019

0.019

  212

1.63e-20

 

 

seqclust/clustering/clusters/dir_CL0164/CL164_tmb.png

N/A

0.004720

0.1580

 

  212

    307

 




 

 
165

165

0.018

0.018

  209

2.90e-21

 

 

seqclust/clustering/clusters/dir_CL0165/CL165_tmb.png

N/A

0.004780

0.4930

 

  209

   1190

 




 

 
166

166

0.018

0.018

  208

1.54e-20

 

 

seqclust/clustering/clusters/dir_CL0166/CL166_tmb.png

N/A

0.004810

0.2240

 

  208

    788

 




 

 
167

167

0.018

0.018

  208

1.30e-20

 

 

seqclust/clustering/clusters/dir_CL0167/CL167_tmb.png

N/A

0.004810

0.2760

 

  208

    488

 

28.85% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.96% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT



 

 
168

168

0.018

0.018

  203

4.91e-24

 

 

seqclust/clustering/clusters/dir_CL0168/CL168_tmb.png

N/A

0.004930

0.8800

 

  203

    876

 

95.57% organelle/plastid



 

 
169

169

0.018

0.018

  203

5.76e-22

 

 

seqclust/clustering/clusters/dir_CL0169/CL169_tmb.png

N/A

0.004930

0.6240

 

  203

    907

 

15.27% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
8.37% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
3.45% organelle/mitochondria
3.45% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
1.48% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH



 

 
170

170

0.018

0.018

  202

1.14e-21

 

 

seqclust/clustering/clusters/dir_CL0170/CL170_tmb.png

N/A

0.004950

0.5660

 

  202

    433

 




 

 
171

171

0.017

0.017

  198

3.80e-22

 

 

seqclust/clustering/clusters/dir_CL0171/CL171_tmb.png

N/A

0.005050

0.8000

 

  198

    750

 

97.98% organelle/plastid
0.51% organelle/mitochondria



 

 
172

172

0.017

0.017

  198

1.16e-20

 

 

seqclust/clustering/clusters/dir_CL0172/CL172_tmb.png

N/A

0.005050

0.2940

 

  198

    388

 




 

 
173

173

0.017

0.017

  198

3.09e-17

 

 

seqclust/clustering/clusters/dir_CL0173/CL173_tmb.png

N/A

0.070700

0.4670

 

  198

    617

 

7.58% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
2.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG



 

 
174

174

0.017

0.017

  196

2.39e-21

 

 

seqclust/clustering/clusters/dir_CL0174/CL174_tmb.png

N/A

0.005100

0.6470

 

  196

    695

 

69.90% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase



 

 
175

175

0.017

0.017

  194

7.34e-21

 

 

seqclust/clustering/clusters/dir_CL0175/CL175_tmb.png

N/A

0.005150

0.1550

 

  194

    320

 

17.53% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.52% Class_I/LTR/Ty1_copia/Angela:Ty1-RT



 

 
176

176

0.017

0.017

  194

1.02e-20

 

 

seqclust/clustering/clusters/dir_CL0176/CL176_tmb.png

N/A

0.005150

0.2280

 

  194

    420

 

23.71% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.52% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-PROT
0.52% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.52% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT



 

 
177

177

0.017

0.017

  190

1.10e-22

 

 

seqclust/clustering/clusters/dir_CL0177/CL177_tmb.png

N/A

0.005260

0.8810

 

  190

    897

 

96.32% organelle/plastid



 

 
178

178

0.016

0.016

  185

8.27e-21

 

 

seqclust/clustering/clusters/dir_CL0178/CL178_tmb.png

N/A

0.005410

0.4800

 

  185

    354

 

0.54% Class_I/LINE:LINE-ENDO



 

 
179

179

0.016

0.016

  184

1.10e-22

 

 

seqclust/clustering/clusters/dir_CL0179/CL179_tmb.png

N/A

0.005430

0.8780

 

  184

    763

 

92.39% organelle/plastid
0.54% organelle/mitochondria



 

 
180

180

0.016

0.016

  184

3.47e-21

 

 

seqclust/clustering/clusters/dir_CL0180/CL180_tmb.png

N/A

0.005430

0.6140

 

  184

    901

 

1.09% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII



 

 
181

181

0.016

0.016

  183

1.30e-22

 

 

seqclust/clustering/clusters/dir_CL0181/CL181_tmb.png

N/A

0.005460

0.8670

 

  183

    786

 

97.81% organelle/plastid



 

 
182

182

0.016

0.016

  182

1.03e-20

 

 

seqclust/clustering/clusters/dir_CL0182/CL182_tmb.png

N/A

0.005490

0.4220

 

  182

   1160

 




 

 
183

183

0.016

0.016

  180

1.40e-21

 

 

seqclust/clustering/clusters/dir_CL0183/CL183_tmb.png

N/A

0.005560

0.6980

 

  180

    924

 

8.89% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG



 

 
184

184

0.015

0.015

  176

1.03e-20

 

 

seqclust/clustering/clusters/dir_CL0184/CL184_tmb.png

N/A

0.005680

0.4190

 

  176

    590

 




 

 
185

185

0.015

0.015

  174

8.50e-21

 

 

seqclust/clustering/clusters/dir_CL0185/CL185_tmb.png

N/A

0.005750

0.1840

 

  174

    315

 




 

 
186

186

0.015

0.015

  173

6.70e-21

 

 

seqclust/clustering/clusters/dir_CL0186/CL186_tmb.png

N/A

0.005780

0.5180

 

  173

   1050

 




 

 
187

187

0.015

0.015

  171

3.47e-21

 

 

seqclust/clustering/clusters/dir_CL0187/CL187_tmb.png

N/A

0.005850

0.6130

 

  171

    582

 

0.58% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT



 

 
188

188

0.015

0.015

  170

3.28e-22

 

 

seqclust/clustering/clusters/dir_CL0188/CL188_tmb.png

N/A

0.005880

0.8090

 

  170

    819

 

90.00% organelle/plastid
6.47% organelle/mitochondria



 

 
189

189

0.014

0.014

  163

1.06e-07

 

 

seqclust/clustering/clusters/dir_CL0189/CL189_tmb.png

N/A

0.368000

0.4420

 

  163

    430

 

0.61% organelle/plastid



 

 
190

190

0.014

0.014

  162

2.09e-22

 

 

seqclust/clustering/clusters/dir_CL0190/CL190_tmb.png

N/A

0.006170

0.8410

 

  162

    873

 

95.68% organelle/plastid
3.09% organelle/mitochondria



 

 
191

191

0.014

0.014

  162

5.79e-21

 

 

seqclust/clustering/clusters/dir_CL0191/CL191_tmb.png

N/A

0.006170

0.1100

 

  162

    280

 




 

 
192

192

0.014

0.014

  161

4.45e-21

 

 

seqclust/clustering/clusters/dir_CL0192/CL192_tmb.png

N/A

0.006210

0.5780

 

  161

    537

 




 

 
193

193

0.014

0.014

  160

7.34e-21

 

 

seqclust/clustering/clusters/dir_CL0193/CL193_tmb.png

N/A

0.006250

0.1510

 

  160

   2240

 




 

 
194

194

0.014

0.014

  159

4.69e-21

 

 

seqclust/clustering/clusters/dir_CL0194/CL194_tmb.png

N/A

0.006290

0.0816

 

  159

    203

 

94.34% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
4.40% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.63% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT



 

 
195

195

0.014

0.014

  157

1.78e-22

 

 

seqclust/clustering/clusters/dir_CL0195/CL195_tmb.png

N/A

0.006370

0.8470

 

  157

    496

 

22.29% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
17.83% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
10.83% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
10.83% Class_I/LTR/Ty1_copia/Ikeros:Ty1-GAG



 

 
196

196

0.013

0.013

  148

5.04e-22

 

 

seqclust/clustering/clusters/dir_CL0196/CL196_tmb.png

N/A

0.006760

0.7830

 

  148

    691

 

53.38% organelle/plastid



 

 
197

197

0.013

0.013

  147

1.16e-20

 

 

seqclust/clustering/clusters/dir_CL0197/CL197_tmb.png

N/A

0.006800

0.3610

 

  147

    306

 




 

 
198

198

0.013

0.013

  143

3.20e-18

 

 

seqclust/clustering/clusters/dir_CL0198/CL198_tmb.png

N/A

0.049000

0.2430

 

  143

    195

 




 

 
199

199

0.012

0.012

  140

5.16e-21

 

 

seqclust/clustering/clusters/dir_CL0199/CL199_tmb.png

N/A

0.007140

0.5560

 

  140

    488

 




 

 
200

200

0.012

0.012

  139

1.00e-20

 

 

seqclust/clustering/clusters/dir_CL0200/CL200_tmb.png

N/A

0.007190

0.4330

 

  139

    270

 




 

 
201

201

0.012

0.012

  138

9.59e-21

 

 

seqclust/clustering/clusters/dir_CL0201/CL201_tmb.png

N/A

0.007250

0.2110

 

  138

    323

 




 

 
202

202

0.012

0.012

  134

8.88e-21

 

 

seqclust/clustering/clusters/dir_CL0202/CL202_tmb.png

N/A

0.007460

0.1860

 

  134

    248

 

0.75% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH



 

 
203

203

0.012

0.012

  134

8.65e-21

 

 

seqclust/clustering/clusters/dir_CL0203/CL203_tmb.png

N/A

0.007460

0.4730

 

  134

    508

 




 

 
204

204

0.012

0.012

  133

6.95e-21

 

 

seqclust/clustering/clusters/dir_CL0204/CL204_tmb.png

N/A

0.007520

0.1370

 

  133

    331

 




 

 
205

205

0.012

0.012

  131

5.91e-21

 

 

seqclust/clustering/clusters/dir_CL0205/CL205_tmb.png

N/A

0.007630

0.5410

 

  131

    381

 

62.60% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
10.69% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.76% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.76% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.76% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT



 

 
206

206

0.012

0.012

  131

6.95e-21

 

 

seqclust/clustering/clusters/dir_CL0206/CL206_tmb.png

N/A

0.007630

0.1390

 

  131

    192

 

81.68% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.76% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.76% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.76% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH



 

 
207

207

0.011

0.011

  127

1.18e-20

 

 

seqclust/clustering/clusters/dir_CL0207/CL207_tmb.png

N/A

0.007870

0.3370

 

  127

    803

 




 

 
208

208

0.011

0.011

  126

8.27e-21

 

 

seqclust/clustering/clusters/dir_CL0208/CL208_tmb.png

N/A

0.007940

0.4820

 

  126

    364

 




 

 
209

209

0.011

0.011

  125

4.45e-21

 

 

seqclust/clustering/clusters/dir_CL0209/CL209_tmb.png

N/A

0.008000

0.5820

 

  125

    363

 




 

 
210

210

0.011

0.011

  124

6.30e-21

 

 

seqclust/clustering/clusters/dir_CL0210/CL210_tmb.png

N/A

0.008060

0.5310

 

  124

    315

 

83.87% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
3.23% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT
1.61% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.81% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.81% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT



 

 
212

212

0.011

0.011

  123

4.69e-21

 

 

seqclust/clustering/clusters/dir_CL0212/CL212_tmb.png

N/A

0.008130

0.0789

 

  123

    202

 

1.63% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-CHDII



 

 
213

213

0.011

0.011

  121

1.25e-18

 

 

seqclust/clustering/clusters/dir_CL0213/CL213_tmb.png

N/A

0.074400

0.7540

 

  121

    468

 




 

 
214

214

0.011

0.011

  120

3.78e-21

 

 

seqclust/clustering/clusters/dir_CL0214/CL214_tmb.png

N/A

0.008330

0.6000

 

  120

    395

 




 

 
215

215

0.011

0.011

  120

5.91e-21

 

 

seqclust/clustering/clusters/dir_CL0215/CL215_tmb.png

N/A

0.008330

0.5380

 

  120

    831

 




 

 
216

216

0.010

0.010

  119

1.10e-21

 

 

seqclust/clustering/clusters/dir_CL0216/CL216_tmb.png

N/A

0.008400

0.7250

 

  119

    478

 

100.00% organelle/plastid



 

 
217

217

0.010

0.010

  119

5.04e-22

 

 

seqclust/clustering/clusters/dir_CL0217/CL217_tmb.png

N/A

0.008400

0.7760

 

  119

    491

 

100.00% organelle/plastid



 

 
218

218

0.010

0.010

  117

4.35e-21

 

 

seqclust/clustering/clusters/dir_CL0218/CL218_tmb.png

N/A

0.008550

0.0734

 

  117

    187

 

99.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT



 

 
219

219

0.010

0.010

  115

5.78e-22

 

 

seqclust/clustering/clusters/dir_CL0219/CL219_tmb.png

N/A

0.008700

0.7690

 

  115

    452

 

26.96% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
6.96% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT



 

 
220

220

0.010

0.010

  114

1.00e-20

 

 

seqclust/clustering/clusters/dir_CL0220/CL220_tmb.png

N/A

0.008770

0.4250

 

  114

    287

 

57.89% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
8.77% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.88% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT



 

 
221

221

0.010

0.010

  114

1.00e-20

 

 

seqclust/clustering/clusters/dir_CL0221/CL221_tmb.png

N/A

0.008770

0.4250

 

  114

    424

 

3.51% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG



 

 
222

222

0.010

0.010

  114

9.02e-21

 

 

seqclust/clustering/clusters/dir_CL0222/CL222_tmb.png

N/A

0.008770

0.4620

 

  114

    375

 




 

 
223

223

0.010

0.010

  113

1.02e-20

 

 

seqclust/clustering/clusters/dir_CL0223/CL223_tmb.png

N/A

0.008850

0.2280

 

  113

    239