Cluster no. 77

Go back to cluster table

Cluster is part of supercluster: 9

Cluster characteristics:

size	2498
size_real	2498
ecount	90448
supercluster	9
annotations_summary	42.63% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.08% Class_II/Subclass_1/TIR/hAT:hAT-TPase 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
pair_completeness	0.770375620127569
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00120096076861489
satellite_probability	4.71413703996316e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	806
S1	833
S3	859

comparative analysis - number of edges between species:

	S2	S1	S3
S2	8960	9850	9810
S1	9850	10600	10500
S3	9810	10500	10600

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.99	1.01	1.00
S1	1.01	1.00	0.99
S3	1.00	0.99	1.01

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 4 0.0016

TatV Ty3-INT TatV Ty3-INT 1065 0.4263

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 1 0.0004

hAT hAT-TPase hAT hAT-TPase 2 0.0008

clusters with similarity:

Cluster	Number of similarity hits

41	423
61	93

clusters connected through mates:

Cluster	Number of shared read pairs	k

41	159	0.48
61	98	0.31
1080	7	0.0419
46	2	0.00268
1	1	0.000462
4	1	0.000413
5	1	0.000432
8	1	0.00136
15	1	0.00207
20	1	0.00229
25	1	0.000973
38	1	0.000912
43	1	0.00186
64	1	0.00213
71	1	0.00236
75	1	0.00171
85	1	0.00284
87	1	0.00452
96	1	0.00219
5200	1	0.0061
11700	1	0.00612

CL77 ----> CL41

No. of shared pairs: :159

CL77 ----> CL61

No. of shared pairs: :98