Cluster no. 153

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Cluster is part of supercluster: 96

Cluster characteristics:

size 249
size_real 249
ecount 378
supercluster 96
annotations_summary
pair_completeness 0.142201834862385
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00401606425702811
satellite_probability 1.61880609779879e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 77
S1 81
S3 91
comparative analysis - number of edges between species:
S2 S1 S3
S2 27 30.0 47.0
S1 30 45.0 43.5
S3 47 43.5 65.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.944 0.920 1.100
S1 0.920 1.210 0.892
S3 1.100 0.892 1.020

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1040 5 0.0498
175 3 0.0182
849 3 0.0296
1000 3 0.03
2600 3 0.0309
21200 2 0.0212
27200 2 0.0212
3 1 0.00061
4 1 0.000425
21 1 0.00113
46 1 0.00148
201 1 0.00722
287 1 0.00893
690 1 0.00976
1620 1 0.0103
1710 1 0.0102
2010 1 0.0104
3470 1 0.0104
7410 1 0.0105
8920 1 0.0105
9840 1 0.0105
12600 1 0.0106
13800 1 0.0105
13800 1 0.0106
15100 1 0.0106
20500 1 0.0106
29100 1 0.0106
32300 1 0.0106
34400 1 0.0106
39100 1 0.0106
41900 1 0.0106
50000 1 0.0106