Cluster no. 92

Cluster no. 92

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Cluster is part of supercluster: 38

Cluster characteristics:

size	1670
size_real	1670
ecount	6747
supercluster	38
annotations_summary	10.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG 0.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT 0.06% Class_I/LINE:LINE-RT
pair_completeness	0.470070422535211
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000598802395209581
satellite_probability	3.54668226065428e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	504
S1	628
S3	538

comparative analysis - number of edges between species:

	S2	S1	S3
S2	609	814	613
S1	814	1040	806
S3	613	806	628

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.991	1.010	0.993
S1	1.010	0.993	0.997
S3	0.993	0.997	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-RT LINE LINE-RT 1 0.0006

TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 2 0.0012

TatV Ty3-GAG TatV Ty3-GAG 167 0.1000

Galadriel Ty3-RT Galadriel Ty3-RT 1 0.0006

clusters connected through mates:

Cluster	Number of shared read pairs	k

58	26	0.0412
279	10	0.0311
50	5	0.0056
105	5	0.0106
4	4	0.00156
659	4	0.013
7040	4	0.0132
90	3	0.00427
2520	3	0.00985
1	2	0.000869
17	2	0.00131
74	2	0.00159
75	2	0.00276
597	2	0.00649
1490	2	0.00655
1690	2	0.00656
1880	2	0.00659
2290	2	0.00658
2820	2	0.00659
5520	2	0.0066
11900	2	0.00661
13800	2	0.00661
27400	2	0.00662
27800	2	0.00662
29600	2	0.00662
46500	2	0.00662
51800	2	0.00662
3	1	0.000541
23	1	0.000919
25	1	0.000857
26	1	0.00068
29	1	0.000831
30	1	0.000723
34	1	0.00174
35	1	0.000499
36	1	0.00126
37	1	0.000704
39	1	0.000742
41	1	0.00213
42	1	0.00076
48	1	0.00123
51	1	0.00157
52	1	0.00208
54	1	0.00191
70	1	0.00163
73	1	0.00137
84	1	0.00167
95	1	0.00196
98	1	0.00179
139	1	0.00242
160	1	0.00274
173	1	0.00297
243	1	0.00324
278	1	0.00318
340	1	0.00314
595	1	0.00325
1110	1	0.00327
1950	1	0.00328
2310	1	0.0033
3080	1	0.00329
3170	1	0.0033
3480	1	0.0033
4050	1	0.00331
4220	1	0.00331
4290	1	0.00331
4380	1	0.00329
4390	1	0.00329
4470	1	0.00331
4600	1	0.00329
4790	1	0.00331
5220	1	0.0033
5380	1	0.00331
6040	1	0.0033
6100	1	0.00331
6800	1	0.0033
6890	1	0.0033
7200	1	0.00331
7280	1	0.00331
7320	1	0.0033
8250	1	0.00331
8900	1	0.00332
9220	1	0.00331
9410	1	0.00331
9980	1	0.00331
10600	1	0.00332
11900	1	0.00332
11900	1	0.00331
11900	1	0.00331
13400	1	0.00331
14200	1	0.00331
14300	1	0.00331
14500	1	0.00331
14600	1	0.00331
14700	1	0.00331
16600	1	0.00331
20200	1	0.00331
21900	1	0.00331
23100	1	0.00331
26400	1	0.00331
29000	1	0.00331
30300	1	0.00331
32800	1	0.00331
33100	1	0.00331
33600	1	0.00331
35000	1	0.00331
35800	1	0.00331
37700	1	0.00331
39900	1	0.00331
41500	1	0.00331
41600	1	0.00331
42200	1	0.00331
43900	1	0.00331
44000	1	0.00331
44400	1	0.00331
48300	1	0.00331
48800	1	0.00331
51100	1	0.00331
51500	1	0.00331

CL92 ----> CL58

No. of shared pairs: :26

CL92 ----> CL279

No. of shared pairs: :10