Cluster no. 222
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Cluster is part of supercluster: 164
Cluster characteristics:
| size |
114 |
| size_real |
114 |
| ecount |
375 |
| supercluster |
164 |
| annotations_summary |
|
| pair_completeness |
0.461538461538462 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0087719298245614 |
| satellite_probability |
9.01795932205422e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
33 |
| S1 |
48 |
| S3 |
33 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
32 |
45 |
33 |
| S1 |
45 |
62 |
49 |
| S3 |
33 |
49 |
27 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
0.992 |
0.983 |
1.030 |
| S1 |
0.983 |
0.955 |
1.080 |
| S3 |
1.030 |
1.080 |
0.852 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 51 |
9 |
0.0253 |
| 1190 |
6 |
0.218 |
| 2620 |
4 |
0.163 |
| 99 |
3 |
0.0287 |
| 1410 |
3 |
0.122 |
| 4940 |
3 |
0.128 |
| 17 |
1 |
0.000805 |
| 69 |
1 |
0.00341 |
| 87 |
1 |
0.0125 |
| 2240 |
1 |
0.0435 |
| 2410 |
1 |
0.0417 |
| 12000 |
1 |
0.0444 |
| 18100 |
1 |
0.0455 |
| 18400 |
1 |
0.0455 |
|