Cluster no. 137

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Cluster is part of supercluster: 81

Cluster characteristics:

size 350
size_real 350
ecount 1626
supercluster 81
annotations_summary 15.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
8.57% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
7.71% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
7.71% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness 0.871657754010695
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00285714285714286
satellite_probability 6.1246173690846e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 112
S1 112
S3 126
comparative analysis - number of edges between species:
S2 S1 S3
S2 180 160 182
S1 160 166 189
S3 182 189 217
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.070 0.969 0.963
S1 0.969 1.020 1.010
S3 0.963 1.010 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 30 0.0857
Athila Ty3-PROT Athila Ty3-PROT 27 0.0771
Athila Ty3-RH Athila Ty3-RH 27 0.0771
Tekay Ty3-RH Tekay Ty3-RH 1 0.0029
Athila Ty3-RT Athila Ty3-RT 53 0.1514

clusters connected through mates:

Cluster Number of shared
read pairs		 k
243 7 0.359
186 2 0.0506
22500 2 0.154
6 1 0.000693
46 1 0.00168
74 1 0.00103
226 1 0.0556
4040 1 0.0741
18200 1 0.0769