Cluster no. 197

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Cluster is part of supercluster: 139

Cluster characteristics:

size 147
size_real 147
ecount 306
supercluster 139
annotations_summary
pair_completeness 0.361111111111111
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00680272108843537
satellite_probability 1.16019814463756e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 50
S1 41
S3 56
comparative analysis - number of edges between species:
S2 S1 S3
S2 31.0 32.5 47
S1 32.5 19.0 30
S3 47.0 30.0 37
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.777 1.100 1.140
S1 1.100 0.875 0.988
S3 1.140 0.988 0.871

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
271 15 0.256
1350 4 0.101
1380 3 0.0779
7290 3 0.0822
14200 3 0.0833
696 2 0.0519
1580 2 0.0533
13000 2 0.0556
90 1 0.00229
3200 1 0.0267
5630 1 0.0282
7300 1 0.0274
7450 1 0.0282
9710 1 0.0278
13300 1 0.0278
16800 1 0.0282
21200 1 0.0282
30700 1 0.0282
36000 1 0.0282

CL197 ----> CL271

image

No. of shared pairs: :15