Cluster no. 69

Cluster no. 69

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Cluster is part of supercluster: 4

Cluster characteristics:

size	2933
size_real	2933
ecount	83298
supercluster	4
annotations_summary	0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness	0.686601495112133
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00340947834981248
satellite_probability	1.94805139038498e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	911
S1	1040
S3	982

comparative analysis - number of edges between species:

	S2	S1	S3
S2	8380	9040	8860
S1	9040	10200	9780
S3	8860	9780	9360

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.010	0.987	1.000
S1	0.987	1.010	1.000
S3	1.000	1.000	0.994

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatV Ty3-RT TatV Ty3-RT 1 0.00034

Tekay Ty3-RT Tekay Ty3-RT 1 0.00034

clusters with similarity:

Cluster	Number of similarity hits

9	819
44	142
70	34
29	9
133	7

clusters connected through mates:

Cluster	Number of shared read pairs	k

44	122	0.112
9	75	0.0501
70	38	0.0651
54	14	0.0282
383	11	0.0383
29	9	0.00766
133	8	0.0262
283	7	0.0239
535	6	0.0215
39	4	0.00303
2450	4	0.0145
6	3	0.00176
1630	3	0.0109
1890	3	0.0109
3	2	0.0011
4	2	0.00079
8	2	0.00237
24	2	0.00145
28	2	0.0013
40	2	0.00224
42	2	0.00155
46	2	0.00234
56	2	0.00163
3990	2	0.0073
5450	2	0.00729
7000	2	0.00731
14500	2	0.0073
20100	2	0.00731
21300	2	0.00731
51500	2	0.00731
1	1	0.00044
5	1	0.000413
7	1	0.000413
12	1	0.000507
15	1	0.00169
17	1	0.00067
22	1	0.000802
23	1	0.000943
31	1	0.000677
33	1	0.000879
34	1	0.00183
36	1	0.00131
37	1	0.000719
38	1	0.000828
55	1	0.00172
58	1	0.00166
60	1	0.00146
63	1	0.00201
67	1	0.00155
80	1	0.000984
83	1	0.00205
89	1	0.00198
91	1	0.0025
93	1	0.00197
114	1	0.00179
121	1	0.00327
166	1	0.00295
222	1	0.00341
427	1	0.00357
518	1	0.00357
537	1	0.0036
819	1	0.00359
1020	1	0.0036
1150	1	0.0036
1370	1	0.0036
1600	1	0.00362
2340	1	0.00363
2990	1	0.00363
3460	1	0.00363
4030	1	0.00364
4880	1	0.00365
5360	1	0.00364
5880	1	0.00364
12700	1	0.00365
13600	1	0.00366
19100	1	0.00366
19500	1	0.00366
20600	1	0.00366
27000	1	0.00366
28600	1	0.00366
34900	1	0.00366
37200	1	0.00366
38700	1	0.00366
46700	1	0.00366
49200	1	0.00366
50900	1	0.00366

CL69 ----> CL44

No. of shared pairs: :122

CL69 ----> CL9

No. of shared pairs: :75

CL69 ----> CL70

No. of shared pairs: :38

CL69 ----> CL54

No. of shared pairs: :14

CL69 ----> CL383

No. of shared pairs: :11