Cluster no. 209

Go back to cluster table

Cluster is part of supercluster: 151

Cluster characteristics:

size 125
size_real 125
ecount 363
supercluster 151
annotations_summary
pair_completeness 0.582278481012658
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.008
satellite_probability 4.44676966830506e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 46
S1 42
S3 37
comparative analysis - number of edges between species:
S2 S1 S3
S2 57.0 46.5 36.0
S1 46.5 42.0 32.5
S3 36.0 32.5 34.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.060 1.000 0.914
S1 1.000 1.040 0.951
S3 0.914 0.951 1.170

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
58 15 0.0433
9600 2 0.111
85 1 0.00484

CL209 ----> CL58

image

No. of shared pairs: :15