Cluster no. 150

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Cluster is part of supercluster: 93

Cluster characteristics:

size 280
size_real 280
ecount 1315
supercluster 93
annotations_summary
pair_completeness 0.627906976744186
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0928571428571429
satellite_probability 6.43252525204239e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 88
S1 80
S3 112
comparative analysis - number of edges between species:
S2 S1 S3
S2 158 147 144
S1 147 132 132
S3 144 132 181
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.030 1.050 0.923
S1 1.050 1.030 0.924
S3 0.923 0.924 1.140

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
68 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
68 17 0.0259
425 3 0.0811
2100 3 0.0857
5590 3 0.0882
276 2 0.0506
3480 2 0.0606
4360 2 0.058
6080 2 0.0588
7980 2 0.0597
36800 2 0.0606
4 1 0.000436
6 1 0.000683
40 1 0.00154
42 1 0.000955
66 1 0.00373
70 1 0.00292
95 1 0.00412
119 1 0.00557
1320 1 0.0263
1660 1 0.0286
7530 1 0.0303
9790 1 0.0308
11600 1 0.0299
20800 1 0.0303
22400 1 0.0303
39000 1 0.0303

CL150 ----> CL68

image

No. of shared pairs: :17