Cluster no. 40

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Cluster is part of supercluster: 17

Cluster characteristics:

size 5034
size_real 5034
ecount 51434
supercluster 17
annotations_summary 11.60% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
2.68% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
2.50% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
pair_completeness 0.605229591836735
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0337703615415177
satellite_probability 9.41293452538798e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 1530
S1 1750
S3 1750
comparative analysis - number of edges between species:
S2 S1 S3
S2 4930 5680 5260
S1 5680 6650 6110
S3 5260 6110 5760
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 0.998 0.996
S1 0.998 1.010 0.995
S3 0.996 0.995 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 126 0.0250
Galadriel Ty3-INT Galadriel Ty3-INT 1 0.0002
Tekay Ty3-INT Tekay Ty3-INT 584 0.1160
chromo-unclass Ty3-INT chromo-unclass Ty3-INT 1 0.0002
Tekay Ty3-RH Tekay Ty3-RH 135 0.0268
hAT hAT-TPase hAT hAT-TPase 1 0.0002

clusters with similarity:

Cluster Number of similarity hits
13 152
6 20
45 18
68 2
113 2
11 1
106 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
13 120 0.059
6 80 0.039
45 61 0.0578
113 29 0.0404
239 12 0.019
11 9 0.00486
1830 7 0.0112
68 6 0.00482
781 6 0.00959
564 5 0.00796
3 4 0.00185
5 4 0.00144
12 4 0.00172
37 4 0.0023
42 4 0.00245
106 4 0.00527
407 4 0.00632
3490 4 0.00643
14 3 0.00128
16 3 0.00132
28 3 0.00159
35 3 0.00129
76 3 0.003
1560 3 0.0048
2290 3 0.00482
2510 3 0.00483
2540 3 0.00482
2900 3 0.00482
4320 3 0.00483
5850 3 0.00483
2 2 0.000713
4 2 0.000695
9 2 0.00108
10 2 0.00108
17 2 0.00109
18 2 0.000806
24 2 0.00116
25 2 0.00135
32 2 0.00114
36 2 0.0018
38 2 0.00129
39 2 0.0012
46 2 0.00166
48 2 0.00177
55 2 0.00215
65 2 0.00251
67 2 0.00202
69 2 0.00224
80 2 0.00147
90 2 0.00196
161 2 0.00295
410 2 0.0032
2610 2 0.00322
2720 2 0.00321
2830 2 0.00322
2870 2 0.00321
3020 2 0.00322
3130 2 0.00322
3250 2 0.00323
3660 2 0.00322
3710 2 0.00322
4710 2 0.00322
4750 2 0.00322
5080 2 0.00322
5860 2 0.00322
6180 2 0.00322
6630 2 0.00322
8910 2 0.00322
9950 2 0.00322
11200 2 0.00322
12500 2 0.00322
12700 2 0.00322
13400 2 0.00322
14500 2 0.00322
15800 2 0.00323
23700 2 0.00323
25500 2 0.00323
26900 2 0.00323
30300 2 0.00323
34900 2 0.00323
36800 2 0.00323
40600 2 0.00323
41200 2 0.00323
50800 2 0.00323
51700 2 0.00323
51900 2 0.00323
52000 2 0.00323
52100 2 0.00323
1 1 0.000382
8 1 0.000839
20 1 0.00112
23 1 0.000711
27 1 0.000551
33 1 0.000674
51 1 0.00105
56 1 0.000636
58 1 0.00105
59 1 0.000969
60 1 0.000968
63 1 0.00119
64 1 0.00108
66 1 0.00117
70 1 0.00108
72 1 0.00104
74 1 0.000635
83 1 0.0012
95 1 0.00121
96 1 0.00109
103 1 0.00127
123 1 0.00137
150 1 0.00154
154 1 0.0014
166 1 0.00146
193 1 0.00147
345 1 0.00158
428 1 0.00159
473 1 0.00157
519 1 0.00158
548 1 0.00159
662 1 0.00159
891 1 0.0016
939 1 0.0016
1420 1 0.0016
1560 1 0.00161
2030 1 0.0016
2420 1 0.00161
2490 1 0.00161
2570 1 0.00161
2760 1 0.00161
2940 1 0.00161
3050 1 0.00161
3090 1 0.00161
3600 1 0.00161
3610 1 0.00161
3710 1 0.00161
3770 1 0.00161
4290 1 0.00161
4400 1 0.00161
4510 1 0.00161
4660 1 0.00161
4710 1 0.00161
5260 1 0.00161
5730 1 0.00161
6060 1 0.00161
6250 1 0.00161
6540 1 0.00161
6950 1 0.00161
7160 1 0.00161
7630 1 0.00161
7750 1 0.00161
8740 1 0.00161
8920 1 0.00161
9190 1 0.00161
9830 1 0.00161
10300 1 0.00161
10700 1 0.00161
10800 1 0.00161
11200 1 0.00161
11700 1 0.00161
12200 1 0.00161
12300 1 0.00161
12400 1 0.00161
13500 1 0.00161
13600 1 0.00161
14100 1 0.00161
14100 1 0.00161
16500 1 0.00161
17200 1 0.00161
17700 1 0.00161
17800 1 0.00161
19800 1 0.00161
20200 1 0.00161
20900 1 0.00161
21500 1 0.00161
22100 1 0.00161
22300 1 0.00161
23100 1 0.00161
24300 1 0.00161
25000 1 0.00161
25000 1 0.00161
26600 1 0.00161
27200 1 0.00161
27600 1 0.00161
28000 1 0.00161
28700 1 0.00161
29000 1 0.00161
29900 1 0.00161
32100 1 0.00161
32400 1 0.00161
33000 1 0.00161
33500 1 0.00161
35400 1 0.00161
35600 1 0.00161
35900 1 0.00161
39900 1 0.00161
42800 1 0.00161
43500 1 0.00161
43500 1 0.00161
44200 1 0.00161
44500 1 0.00161
45100 1 0.00161
45300 1 0.00161
45400 1 0.00161
46300 1 0.00161
46400 1 0.00161
48400 1 0.00161
48600 1 0.00161
49000 1 0.00161
49100 1 0.00161
51000 1 0.00161
51200 1 0.00161
51300 1 0.00161
51600 1 0.00161
51700 1 0.00161
52100 1 0.00161

CL40 ----> CL13

image

No. of shared pairs: :120

CL40 ----> CL6

image

No. of shared pairs: :80

CL40 ----> CL45

image

No. of shared pairs: :61

CL40 ----> CL113

image

No. of shared pairs: :29

CL40 ----> CL239

image

No. of shared pairs: :12