Cluster no. 56

Cluster no. 56

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Cluster is part of supercluster: 1

Cluster characteristics:

size	3795
size_real	3795
ecount	388584
supercluster	1
annotations_summary	0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 0.03% Class_I/LINE:LINE-RT 0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
pair_completeness	0.331578947368421
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00447957839262187
satellite_probability	1.03154576471437e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1210
S1	1290
S3	1300

comparative analysis - number of edges between species:

	S2	S1	S3
S2	44000	41800	45100
S1	41800	39600	42700
S3	45100	42700	45800

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.998	1.000	1.000
S1	1.000	0.999	1.000
S3	1.000	1.000	0.997

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-RT LINE LINE-RT 1 0.00026

SIRE Ty1-INT SIRE Ty1-INT 1 0.00026

Ale Ty1-PROT Ale Ty1-PROT 1 0.00026

clusters with similarity:

Cluster	Number of similarity hits

28	11400
10	4970
12	750
38	12
74	10
23	2
4	1
555	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

10	555	0.254
12	437	0.165
28	123	0.0554
74	47	0.0246
27	26	0.0121
38	15	0.00795
555	14	0.0145
42	7	0.00356
584	6	0.00622
4	5	0.00156
8	5	0.00328
37	5	0.00241
39	5	0.0025
637	5	0.0052
9	4	0.00184
13	4	0.00169
46	4	0.00261
541	3	0.0031
1020	3	0.00313
2890	3	0.00314
11	2	0.000915
14	2	0.000748
18	2	0.000711
23	2	0.00115
59	2	0.00146
69	2	0.00163
3550	2	0.00209
7170	2	0.0021
13600	2	0.0021
16600	2	0.0021
7	1	0.000323
16	1	0.000384
22	1	0.000519
24	1	0.000486
29	1	0.000539
30	1	0.000491
32	1	0.00048
34	1	0.000815
40	1	0.000636
41	1	0.000891
45	1	0.00072
60	1	0.000732
63	1	0.00085
68	1	0.000634
75	1	0.000726
79	1	0.000754
80	1	0.000589
86	1	0.000872
88	1	0.000838
90	1	0.000738
107	1	0.000897
114	1	0.000807
119	1	0.000909
139	1	0.000939
147	1	0.00104
148	1	0.000964
164	1	0.000971
180	1	0.00103
202	1	0.001
249	1	0.00103
287	1	0.00103
898	1	0.00104
2550	1	0.00105
3410	1	0.00105
4010	1	0.00105
5650	1	0.00105
6420	1	0.00105
7330	1	0.00105
9640	1	0.00105
14200	1	0.00105
14200	1	0.00105
14600	1	0.00105
16500	1	0.00105
16800	1	0.00105
18000	1	0.00105
18100	1	0.00105
18600	1	0.00105
19100	1	0.00105
20700	1	0.00105
20900	1	0.00105
23900	1	0.00105
29100	1	0.00105
30000	1	0.00105
32300	1	0.00105
41300	1	0.00105
42100	1	0.00105
45400	1	0.00105
45600	1	0.00105
50700	1	0.00105
51300	1	0.00105

CL56 ----> CL10

No. of shared pairs: :555

CL56 ----> CL12

No. of shared pairs: :437

CL56 ----> CL28

No. of shared pairs: :123

CL56 ----> CL74

No. of shared pairs: :47

CL56 ----> CL27

No. of shared pairs: :26

CL56 ----> CL38

No. of shared pairs: :15

CL56 ----> CL555

No. of shared pairs: :14