Cluster no. 74

Cluster no. 74

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size	2604
size_real	2604
ecount	217871
supercluster	1
annotations_summary	0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
pair_completeness	0.153743907842269
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0825652841781874
satellite_probability	7.54297659847558e-17
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	811
S1	901
S3	892

comparative analysis - number of edges between species:

	S2	S1	S3
S2	20300	25000	21100
S1	25000	31000	26100
S3	21100	26100	22000

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	1	0.999
S1	1.000	1	1.000
S3	0.999	1	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Reina Ty3-RT Reina Ty3-RT 1 0.00038

clusters with similarity:

Cluster	Number of similarity hits

18	14500
12	514
38	11
56	10
37	2
34	1
147	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

18	781	0.277
12	426	0.16
56	47	0.0246
35	24	0.00903
38	12	0.00635
7	8	0.00258
3	7	0.0028
13	7	0.00295
17	6	0.00276
5	5	0.00161
9	5	0.00229
10	5	0.00228
16	5	0.00192
21	5	0.00286
28	5	0.00225
32	5	0.00239
27	4	0.00186
36	4	0.00276
1	3	0.00102
2	3	0.000955
11	3	0.00137
14	3	0.00112
23	3	0.00172
24	3	0.00146
31	3	0.00139
37	3	0.00145
4	2	0.000622
22	2	0.00104
25	2	0.0011
30	2	0.000981
39	2	0.000999
42	2	0.00102
44	2	0.00113
48	2	0.00136
68	2	0.00127
70	2	0.00158
73	2	0.00145
76	2	0.0015
84	2	0.0016
92	2	0.00159
98	2	0.00165
108	2	0.00195
114	2	0.00161
128	2	0.0018
2070	2	0.00208
3590	2	0.00209
5800	2	0.00209
20100	2	0.00209
30600	2	0.00209
32400	2	0.00209
42400	2	0.00209
6	1	0.000419
34	1	0.000813
40	1	0.000635
45	1	0.000719
49	1	0.000655
51	1	0.000775
52	1	0.000882
55	1	0.00079
58	1	0.000778
59	1	0.000731
60	1	0.00073
71	1	0.000822
72	1	0.000772
79	1	0.000752
80	1	0.000589
81	1	0.000931
83	1	0.000854
88	1	0.000836
90	1	0.000737
93	1	0.00084
97	1	0.000732
119	1	0.000907
130	1	0.000938
134	1	0.000923
137	1	0.00103
141	1	0.000975
148	1	0.000962
182	1	0.00101
253	1	0.00103
276	1	0.00104
316	1	0.00104
345	1	0.00103
539	1	0.00103
551	1	0.00104
565	1	0.00104
632	1	0.00104
880	1	0.00104
1510	1	0.00104
1710	1	0.00104
2000	1	0.00104
2110	1	0.00104
2660	1	0.00104
2910	1	0.00104
3220	1	0.00104
3590	1	0.00104
3700	1	0.00104
4000	1	0.00104
4380	1	0.00104
4780	1	0.00104
6380	1	0.00104
6490	1	0.00104
9640	1	0.00105
12300	1	0.00105
14100	1	0.00105
14400	1	0.00105
19000	1	0.00105
19800	1	0.00105
21300	1	0.00105
23300	1	0.00105
25300	1	0.00105
27900	1	0.00105
29500	1	0.00105
30300	1	0.00105
30900	1	0.00105
32900	1	0.00105
33300	1	0.00105
34600	1	0.00105
35600	1	0.00105
36500	1	0.00105
36700	1	0.00105
37000	1	0.00105
37400	1	0.00105
44400	1	0.00105
44800	1	0.00105
45200	1	0.00105
45900	1	0.00105
48700	1	0.00105
50100	1	0.00105
50500	1	0.00105
51100	1	0.00105
51200	1	0.00105

CL74 ----> CL18

No. of shared pairs: :781

CL74 ----> CL12

No. of shared pairs: :426

CL74 ----> CL56

No. of shared pairs: :47

CL74 ----> CL35

No. of shared pairs: :24

CL74 ----> CL38

No. of shared pairs: :12