Cluster no. 72

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Cluster is part of supercluster: 30

Cluster characteristics:

size 2643
size_real 2643
ecount 63032
supercluster 30
annotations_summary 0.04% organelle/plastid
pair_completeness 0.590252707581227
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0162693908437382
satellite_probability 5.66753510169658e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 890
S1 926
S3 827
comparative analysis - number of edges between species:
S2 S1 S3
S2 6740 7530 6360
S1 7530 8210 7060
S3 6360 7060 6170
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.998 1.010 0.991
S1 1.010 0.995 0.996
S3 0.991 0.996 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00038

clusters with similarity:

Cluster Number of similarity hits
9 475
31 67
78 5
25 4
37 2
29 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
9 127 0.0811
31 48 0.0311
4 6 0.00231
37 6 0.00411
25 5 0.00414
1780 5 0.0145
24 4 0.00277
42 4 0.00295
1090 4 0.0115
1950 4 0.0116
2430 4 0.0116
3280 4 0.0116
2 3 0.00119
3 3 0.00159
6 3 0.00169
10 3 0.0019
18 3 0.00136
32 3 0.00204
78 3 0.00581
2400 3 0.00873
5710 3 0.00876
6710 3 0.00876
13700 3 0.00877
11 2 0.00127
13 2 0.00114
16 2 0.001
22 2 0.00152
23 2 0.00177
26 2 0.00132
29 2 0.00161
48 2 0.00234
65 2 0.00387
2160 2 0.00582
3360 2 0.00582
4370 2 0.00585
4570 2 0.00585
5930 2 0.00584
6200 2 0.00586
7160 2 0.00584
7700 2 0.00584
7780 2 0.00584
9370 2 0.00585
11200 2 0.00585
15300 2 0.00586
17800 2 0.00586
18500 2 0.00586
28900 2 0.00586
29400 2 0.00586
29700 2 0.00586
32200 2 0.00586
36100 2 0.00586
40300 2 0.00586
40800 2 0.00586
50000 2 0.00586
1 1 0.000427
5 1 0.000401
7 1 0.000402
8 1 0.0011
12 1 0.00049
14 1 0.000485
17 1 0.000641
21 1 0.000883
36 1 0.0012
40 1 0.00104
41 1 0.00196
43 1 0.0014
45 1 0.00129
50 1 0.00107
51 1 0.00148
54 1 0.00177
55 1 0.00154
58 1 0.00149
59 1 0.00133
60 1 0.00133
74 1 0.000772
75 1 0.00131
76 1 0.00139
79 1 0.0014
83 1 0.0018
91 1 0.00214
108 1 0.00242
201 1 0.00259
305 1 0.0027
496 1 0.00281
572 1 0.00289
802 1 0.0029
1230 1 0.0029
1310 1 0.00292
1780 1 0.00289
1980 1 0.0029
2430 1 0.00292
2860 1 0.00292
2930 1 0.00291
3020 1 0.00291
3260 1 0.00291
3310 1 0.00292
3810 1 0.00292
3940 1 0.00292
4500 1 0.00292
4800 1 0.00292
5680 1 0.00292
6420 1 0.00293
7010 1 0.00292
7190 1 0.00292
8720 1 0.00292
9260 1 0.00292
9670 1 0.00293
10000 1 0.00292
10200 1 0.00292
11000 1 0.00292
11500 1 0.00292
11800 1 0.00292
13100 1 0.00292
13200 1 0.00292
13300 1 0.00292
13700 1 0.00292
14300 1 0.00292
14800 1 0.00293
15900 1 0.00293
17000 1 0.00293
17000 1 0.00293
17800 1 0.00293
18600 1 0.00293
19000 1 0.00293
19400 1 0.00293
20200 1 0.00293
20800 1 0.00293
24900 1 0.00293
25000 1 0.00293
26300 1 0.00293
26900 1 0.00293
27600 1 0.00293
27700 1 0.00293
28500 1 0.00293
29500 1 0.00293
29600 1 0.00293
32000 1 0.00293
32800 1 0.00293
33900 1 0.00293
34000 1 0.00293
34800 1 0.00293
34900 1 0.00293
35800 1 0.00293
35800 1 0.00293
36100 1 0.00293
37000 1 0.00293
37700 1 0.00293
37900 1 0.00293
38300 1 0.00293
38800 1 0.00293
39100 1 0.00293
40000 1 0.00293
41300 1 0.00293
42500 1 0.00293
42900 1 0.00293
44000 1 0.00293
44100 1 0.00293
44500 1 0.00293
45400 1 0.00293
46100 1 0.00293
47800 1 0.00293
50200 1 0.00293
52100 1 0.00293
52200 1 0.00293

CL72 ----> CL9

image

No. of shared pairs: :127

CL72 ----> CL31

image

No. of shared pairs: :48