Cluster no. 22

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Cluster is part of supercluster: 15

Cluster characteristics:

size 6706
size_real 6706
ecount 47352
supercluster 15
annotations_summary 1.36% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.28% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.27% organelle/plastid
0.13% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.13% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.07% organelle/mitochondria
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.549445471349353
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000447360572621533
satellite_probability 1.46614129999921e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 2150
S1 2180
S3 2380
comparative analysis - number of edges between species:
S2 S1 S3
S2 4760 5090 5040
S1 5090 5900 5520
S3 5040 5520 5400
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.020 0.981 1.000
S1 0.981 1.020 0.992
S3 1.000 0.992 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 5 0.00075
plastid plastid 18 0.00268
Ale Ty1-INT Ale Ty1-INT 2 0.00030
Tork Ty1-INT Tork Ty1-INT 1 0.00015
Ivana Ty1-PROT Ivana Ty1-PROT 1 0.00015
SIRE Ty1-RT SIRE Ty1-RT 1 0.00015
Tork Ty1-RT Tork Ty1-RT 2 0.00030
Reina Ty3-INT Reina Ty3-INT 9 0.00134
Tekay Ty3-INT Tekay Ty3-INT 91 0.01357
Tekay Ty3-PROT Tekay Ty3-PROT 4 0.00060
Reina Ty3-RT Reina Ty3-RT 9 0.00134
TatV Ty3-RT TatV Ty3-RT 1 0.00015
Tekay Ty3-RT Tekay Ty3-RT 19 0.00283
TatV Ty3-aRH TatV Ty3-aRH 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
37 28
67 6
12 1
49 1
60 1
100 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
37 181 0.0865
12 19 0.0071
33 11 0.00598
1 9 0.00302
39 9 0.00445
16 8 0.00304
14 7 0.0026
291 6 0.00598
610 6 0.00609
1340 6 0.00612
1750 6 0.00613
5 5 0.0016
10 5 0.00226
17 5 0.00228
23 5 0.00284
28 5 0.00223
30 5 0.00243
49 5 0.00323
2950 5 0.00511
4 4 0.00124
6 4 0.00166
13 4 0.00167
27 4 0.00184
48 4 0.00269
67 4 0.00297
80 4 0.00233
2420 4 0.00409
3200 4 0.00409
5010 4 0.00409
7 3 0.000961
9 3 0.00136
11 3 0.00136
18 3 0.00106
24 3 0.00144
36 3 0.00204
42 3 0.00151
45 3 0.00213
53 3 0.00213
59 3 0.00216
1040 3 0.00306
1310 3 0.00306
2290 3 0.00306
3470 3 0.00307
3680 3 0.00307
4540 3 0.00307
4660 3 0.00307
4680 3 0.00307
7540 3 0.00307
8850 3 0.00307
9220 3 0.00307
10900 3 0.00307
11900 3 0.00307
11900 3 0.00307
12800 3 0.00307
12900 3 0.00307
13700 3 0.00307
3 2 0.000793
8 2 0.00129
25 2 0.00109
26 2 0.000933
38 2 0.00105
44 2 0.00111
54 2 0.00167
60 2 0.00144
72 2 0.00152
74 2 0.00104
88 2 0.00164
116 2 0.00177
595 2 0.00204
1580 2 0.00204
1730 2 0.00204
2520 2 0.00205
2640 2 0.00204
3760 2 0.00205
3800 2 0.00205
3980 2 0.00205
4130 2 0.00205
4390 2 0.00205
4410 2 0.00205
4530 2 0.00205
4660 2 0.00205
4990 2 0.00205
5050 2 0.00205
5210 2 0.00205
5890 2 0.00205
6260 2 0.00205
6420 2 0.00205
6440 2 0.00205
6560 2 0.00205
6620 2 0.00205
6640 2 0.00205
7280 2 0.00205
7590 2 0.00205
7630 2 0.00205
7740 2 0.00205
7970 2 0.00205
8200 2 0.00205
9330 2 0.00205
9600 2 0.00205
9660 2 0.00205
9860 2 0.00205
10000 2 0.00205
10600 2 0.00205
11200 2 0.00205
11300 2 0.00205
12700 2 0.00205
16900 2 0.00205
18600 2 0.00205
20400 2 0.00205
20900 2 0.00205
21000 2 0.00205
21500 2 0.00205
24300 2 0.00205
25000 2 0.00205
25700 2 0.00205
25900 2 0.00205
26100 2 0.00205
26800 2 0.00205
26900 2 0.00205
27600 2 0.00205
29100 2 0.00205
30700 2 0.00205
33200 2 0.00205
33700 2 0.00205
35700 2 0.00205
37700 2 0.00205
40400 2 0.00205
40900 2 0.00205
41100 2 0.00205
43200 2 0.00205
43400 2 0.00205
46900 2 0.00205
47900 2 0.00205
48100 2 0.00205
49500 2 0.00205
50100 2 0.00205
50900 2 0.00205
52500 2 0.00205
2 1 0.000316
20 1 8e-04
32 1 0.000474
35 1 0.000373
43 1 0.000741
50 1 0.000638
55 1 0.000778
56 1 0.000519
61 1 0.000886
65 1 0.000868
69 1 0.000802
70 1 0.000778
75 1 0.000715
79 1 0.000741
84 1 0.000786
91 1 0.000907
96 1 0.000787
100 1 0.000923
106 1 0.000896
107 1 0.000879
123 1 0.000919
128 1 0.000884
129 1 0.000971
130 1 0.000921
134 1 0.000907
140 1 0.000959
146 1 0.00096
147 1 0.00101
151 1 0.000966
175 1 0.000956
240 1 0.000998
247 1 0.000994
264 1 0.00101
267 1 0.000993
280 1 0.001
429 1 0.00101
461 1 0.00102
619 1 0.00102
663 1 0.00102
762 1 0.00102
1040 1 0.00102
1460 1 0.00102
1960 1 0.00102
2010 1 0.00102
2330 1 0.00102
2340 1 0.00102
2700 1 0.00102
2820 1 0.00102
2910 1 0.00102
3040 1 0.00102
3220 1 0.00102
3480 1 0.00102
3700 1 0.00102
3710 1 0.00102
3860 1 0.00102
3890 1 0.00102
4340 1 0.00102
4450 1 0.00102
4490 1 0.00102
4500 1 0.00102
4510 1 0.00102
4530 1 0.00102
4640 1 0.00102
4640 1 0.00102
4700 1 0.00102
4730 1 0.00102
4960 1 0.00102
5200 1 0.00102
5240 1 0.00102
5250 1 0.00102
5350 1 0.00102
5410 1 0.00102
5420 1 0.00102
5680 1 0.00102
5690 1 0.00102
6110 1 0.00102
6520 1 0.00102
6660 1 0.00102
6670 1 0.00102
6860 1 0.00102
7000 1 0.00102
7030 1 0.00102
7750 1 0.00102
7850 1 0.00103
7980 1 0.00102
7990 1 0.00102
8090 1 0.00103
8360 1 0.00103
8810 1 0.00102
8920 1 0.00102
9000 1 0.00102
9100 1 0.00102
9360 1 0.00102
9750 1 0.00103
9770 1 0.00102
9880 1 0.00102
9940 1 0.00102
9960 1 0.00102
10100 1 0.00102
10200 1 0.00103
10300 1 0.00103
10300 1 0.00102
10400 1 0.00102
10800 1 0.00102
11100 1 0.00102
11300 1 0.00102
11400 1 0.00102
11500 1 0.00102
12100 1 0.00102
12400 1 0.00102
12500 1 0.00102
12700 1 0.00103
13000 1 0.00103
13300 1 0.00102
13400 1 0.00102
13500 1 0.00102
13500 1 0.00102
13800 1 0.00102
14400 1 0.00102
14500 1 0.00102
14600 1 0.00102
15200 1 0.00102
15400 1 0.00102
15600 1 0.00102
15800 1 0.00102
16000 1 0.00102
16100 1 0.00102
16400 1 0.00102
17000 1 0.00102
17000 1 0.00102
17500 1 0.00102
18100 1 0.00102
18200 1 0.00102
18200 1 0.00102
18400 1 0.00102
18700 1 0.00102
19200 1 0.00102
19400 1 0.00102
19600 1 0.00102
19600 1 0.00102
19700 1 0.00102
20000 1 0.00102
20100 1 0.00102
20100 1 0.00102
20300 1 0.00102
20300 1 0.00102
20600 1 0.00102
21000 1 0.00102
21300 1 0.00102
21400 1 0.00102
22200 1 0.00102
22200 1 0.00102
23100 1 0.00102
23900 1 0.00102
24000 1 0.00102
24100 1 0.00102
24100 1 0.00102
24100 1 0.00102
24200 1 0.00102
24300 1 0.00102
24800 1 0.00102
25000 1 0.00102
25400 1 0.00102
25600 1 0.00102
25700 1 0.00102
25700 1 0.00102
26000 1 0.00102
26200 1 0.00102
26300 1 0.00102
26600 1 0.00102
27300 1 0.00102
27500 1 0.00102
27600 1 0.00102
27800 1 0.00102
28300 1 0.00102
28400 1 0.00102
28500 1 0.00102
28600 1 0.00102
28700 1 0.00102
28800 1 0.00102
29200 1 0.00102
29600 1 0.00102
30000 1 0.00102
30000 1 0.00102
30100 1 0.00102
30100 1 0.00102
31400 1 0.00102
31600 1 0.00102
31900 1 0.00102
33000 1 0.00102
33200 1 0.00102
33600 1 0.00102
33600 1 0.00102
33800 1 0.00102
34000 1 0.00102
34200 1 0.00102
34300 1 0.00102
34500 1 0.00102
34800 1 0.00102
35200 1 0.00102
35300 1 0.00102
35700 1 0.00102
35800 1 0.00102
35900 1 0.00102
36300 1 0.00102
36500 1 0.00102
36700 1 0.00102
37000 1 0.00102
37100 1 0.00102
37500 1 0.00102
37900 1 0.00102
38200 1 0.00102
38200 1 0.00102
38400 1 0.00102
38700 1 0.00102
39000 1 0.00102
39200 1 0.00102
39600 1 0.00102
39600 1 0.00102
39900 1 0.00102
40000 1 0.00102
40000 1 0.00102
40200 1 0.00102
40400 1 0.00102
41100 1 0.00102
41400 1 0.00102
41600 1 0.00102
41700 1 0.00102
41800 1 0.00102
42700 1 0.00102
42700 1 0.00102
42700 1 0.00102
43600 1 0.00102
43800 1 0.00102
44000 1 0.00102
45300 1 0.00102
45300 1 0.00102
45800 1 0.00102
46200 1 0.00102
46300 1 0.00102
46700 1 0.00102
47000 1 0.00102
47200 1 0.00102
47200 1 0.00102
47300 1 0.00102
47400 1 0.00102
47800 1 0.00102
48600 1 0.00102
48800 1 0.00102
49400 1 0.00102
49700 1 0.00102
50200 1 0.00102
50600 1 0.00102
50800 1 0.00102
51400 1 0.00102
52400 1 0.00102

CL22 ----> CL37

image

No. of shared pairs: :181

CL22 ----> CL12

image

No. of shared pairs: :19

CL22 ----> CL33

image

No. of shared pairs: :11