Cluster no. 29

Cluster no. 29

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Cluster is part of supercluster: 4

Cluster characteristics:

size	6262
size_real	6262
ecount	830075
supercluster	4
annotations_summary	0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
pair_completeness	0.552690304983883
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0178856595336953
satellite_probability	8.39231984590771e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	2030
S1	2190
S3	2040

comparative analysis - number of edges between species:

	S2	S1	S3
S2	85000	95000	85600
S1	95000	106000	95600
S3	85600	95600	86700

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	1.000	0.999
S1	1.000	1.000	0.998
S3	0.999	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-INT Ale Ty1-INT 1 0.00016

TatV Ty3-INT TatV Ty3-INT 2 0.00032

clusters with similarity:

Cluster	Number of similarity hits

9	6960
44	884
71	52
50	22
244	12
69	9
42	6
198	4
8	3
47	2
11	1
25	1
72	1
590	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

9	818	0.384
44	347	0.202
71	42	0.0361
42	34	0.0177
244	26	0.028
198	25	0.0264
8	9	0.0061
69	9	0.00766
47	7	0.00591
590	6	0.00658
50	5	0.00335
12	3	0.00115
1150	3	0.00331
2280	3	0.00331
2680	3	0.00332
3080	3	0.00331
3460	3	0.00331
13400	3	0.00332
6	2	0.000857
48	2	0.00141
55	2	0.00165
67	2	0.00157
72	2	0.00161
812	2	0.0022
1240	2	0.00221
1680	2	0.00221
3550	2	0.00221
4000	2	0.00221
4540	2	0.00221
10200	2	0.00221
10700	2	0.00221
12700	2	0.00221
13000	2	0.00221
13700	2	0.00221
24300	2	0.00221
35500	2	0.00221
37000	2	0.00221
48900	2	0.00221
4	1	0.000316
11	1	0.000468
19	1	0.000824
21	1	0.00059
24	1	0.000499
25	1	0.000566
28	1	0.000461
33	1	0.000566
37	1	0.000495
39	1	0.000513
46	1	0.000673
56	1	0.000539
60	1	0.00076
61	1	0.000947
75	1	0.000754
76	1	0.00078
92	1	0.000831
96	1	0.000835
99	1	0.00101
147	1	0.00109
795	1	0.0011
1190	1	0.0011
1350	1	0.0011
1470	1	0.0011
2000	1	0.00111
2280	1	0.00111
2350	1	0.0011
2590	1	0.0011
2820	1	0.00111
2930	1	0.0011
2970	1	0.00111
3660	1	0.00111
3690	1	0.00111
4040	1	0.00111
4150	1	0.00111
4410	1	0.00111
4750	1	0.00111
5880	1	0.00111
5960	1	0.00111
6690	1	0.00111
7070	1	0.00111
7120	1	0.00111
7520	1	0.00111
7920	1	0.00111
8030	1	0.00111
9480	1	0.00111
13000	1	0.00111
13100	1	0.00111
14200	1	0.00111
14300	1	0.00111
15400	1	0.00111
17500	1	0.00111
22000	1	0.00111
22100	1	0.00111
22200	1	0.00111
23100	1	0.00111
25500	1	0.00111
27400	1	0.00111
30700	1	0.00111
31600	1	0.00111
32800	1	0.00111
35700	1	0.00111
35800	1	0.00111
39400	1	0.00111
40900	1	0.00111
42000	1	0.00111
42000	1	0.00111
45000	1	0.00111
45900	1	0.00111
46700	1	0.00111
46900	1	0.00111
47100	1	0.00111
47600	1	0.00111
48100	1	0.00111
48800	1	0.00111
49600	1	0.00111
49700	1	0.00111
50300	1	0.00111
50800	1	0.00111

CL29 ----> CL9

No. of shared pairs: :818

CL29 ----> CL44

No. of shared pairs: :347

CL29 ----> CL71

No. of shared pairs: :42

CL29 ----> CL42

No. of shared pairs: :34

CL29 ----> CL244

No. of shared pairs: :26

CL29 ----> CL198

No. of shared pairs: :25