Cluster no. 36

Cluster no. 36

Go back to cluster table

Cluster is part of supercluster: 10

Cluster characteristics:

size	5441
size_real	5441
ecount	209470
supercluster	10
annotations_summary	0.07% organelle/plastid 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.02% Class_I/LINE:LINE-RT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
pair_completeness	0.693432928727046
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00147031795625804
satellite_probability	1.94805139038498e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1770
S1	1840
S3	1830

comparative analysis - number of edges between species:

	S2	S1	S3
S2	22600	23500	22700
S1	23500	24200	23500
S3	22700	23500	23100

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.999	1.000	0.997
S1	1.000	0.999	0.996
S3	0.997	0.996	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 4 0.00074

LINE LINE-RT LINE LINE-RT 1 0.00018

Ale Ty1-INT Ale Ty1-INT 1 0.00018

SIRE Ty1-RH SIRE Ty1-RH 1 0.00018

Ivana Ty1-RT Ivana Ty1-RT 1 0.00018

TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 0.00018

CRM Ty3-INT CRM Ty3-INT 1 0.00018

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 0.00018

Tekay Ty3-INT Tekay Ty3-INT 3 0.00055

clusters with similarity:

Cluster	Number of similarity hits

83	169
65	136
91	6
158	4

clusters connected through mates:

Cluster	Number of shared read pairs	k

65	121	0.181
83	112	0.158
91	39	0.063
158	28	0.0516
208	14	0.0272
368	10	0.0198
4	7	0.00254
38	6	0.0042
3	5	0.00245
24	5	0.00313
39	5	0.00325
12	4	0.00182
67	4	0.00462
68	4	0.00358
74	4	0.00276
90	4	0.00447
1300	4	0.00802
9	3	0.00175
10	3	0.00174
13	3	0.00157
22	3	0.00204
25	3	0.00221
34	3	0.00391
42	3	0.00199
5	2	0.000756
11	2	0.00116
17	2	0.00117
18	2	0.000849
21	2	0.00156
26	2	0.0012
37	2	0.00124
40	2	0.0018
43	2	0.00231
45	2	0.00215
60	2	0.00221
64	2	0.0025
97	2	0.00221
102	2	0.00364
457	2	0.00398
1420	2	0.00402
2020	2	0.00404
2210	2	0.00403
10200	2	0.00405
33400	2	0.00405
47900	2	0.00405
1	1	0.000401
2	1	0.000373
6	1	0.00052
8	1	0.000939
14	1	0.000452
23	1	0.000781
28	1	0.000568
30	1	0.000635
32	1	0.000615
48	1	0.000995
50	1	0.000922
53	1	0.00108
55	1	0.00125
69	1	0.00131
72	1	0.0012
75	1	0.00109
80	1	0.000809
85	1	0.00147
86	1	0.00146
92	1	0.00126
93	1	0.00137
95	1	0.00142
98	1	0.00133
105	1	0.00151
107	1	0.00153
116	1	0.00154
131	1	0.00154
140	1	0.00179
151	1	0.00181
160	1	0.0018
166	1	0.00179
183	1	0.00197
185	1	0.00181
206	1	0.00185
230	1	0.00188
325	1	0.00193
356	1	0.00197
364	1	0.002
383	1	0.00197
428	1	0.00199
631	1	0.002
659	1	0.002
683	1	0.00199
810	1	0.00201
904	1	0.002
1050	1	0.002
1350	1	0.00201
1780	1	0.00201
1970	1	0.00202
2340	1	0.00201
3740	1	0.00202
4800	1	0.00202
7090	1	0.00202
7740	1	0.00202
9810	1	0.00202
9860	1	0.00202
10500	1	0.00202
10500	1	0.00202
10800	1	0.00202
11000	1	0.00203
11600	1	0.00202
14500	1	0.00202
15200	1	0.00203
18000	1	0.00203
19000	1	0.00203
24200	1	0.00203
25700	1	0.00203
27000	1	0.00203
30400	1	0.00203
35100	1	0.00203
42000	1	0.00203
47300	1	0.00203
49400	1	0.00203

CL36 ----> CL65

No. of shared pairs: :121

CL36 ----> CL83

No. of shared pairs: :112

CL36 ----> CL91

No. of shared pairs: :39

CL36 ----> CL158

No. of shared pairs: :28

CL36 ----> CL208

No. of shared pairs: :14

CL36 ----> CL368

No. of shared pairs: :10