Cluster no. 163

Go back to cluster table

Cluster is part of supercluster: 106

Cluster characteristics:

size 214
size_real 214
ecount 631
supercluster 106
annotations_summary 16.82% Class_I/LTR/Ty1_copia/Bianca:Ty1-INT
12.15% Class_I/LTR/Ty1_copia/Bianca:Ty1-PROT
9.81% Class_I/LTR/Ty1_copia/Bianca:Ty1-GAG
pair_completeness 0.621212121212121
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00467289719626168
satellite_probability 5.75854876097884e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 76
S1 73
S3 65
comparative analysis - number of edges between species:
S2 S1 S3
S2 83 79 67
S1 79 65 72
S3 67 72 47
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.999 1.010 0.993
S1 1.010 0.879 1.130
S3 0.993 1.130 0.857

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Bianca Ty1-GAG Bianca Ty1-GAG 21 0.098
Bianca Ty1-INT Bianca Ty1-INT 36 0.168
Bianca Ty1-PROT Bianca Ty1-PROT 26 0.121

clusters connected through mates:

Cluster Number of shared
read pairs		 k
532 7 0.219
841 7 0.233
108 6 0.0615
561 4 0.125
52000 2 0.0769
12 1 0.000579
969 1 0.0328
1710 1 0.0345
2940 1 0.0364
8580 1 0.0392
24400 1 0.0385
34900 1 0.0385