Cluster no. 195

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Cluster is part of supercluster: 137

Cluster characteristics:

size 157
size_real 157
ecount 496
supercluster 137
annotations_summary 22.29% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
17.83% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
10.83% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
10.83% Class_I/LTR/Ty1_copia/Ikeros:Ty1-GAG
pair_completeness 0.847058823529412
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00636942675159236
satellite_probability 1.78459432152064e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 52
S1 61
S3 44
comparative analysis - number of edges between species:
S2 S1 S3
S2 52.0 60.5 46.0
S1 60.5 79.0 53.5
S3 46.0 53.5 45.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.030 0.981 0.996
S1 0.981 1.050 0.952
S3 0.996 0.952 1.070

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ikeros Ty1-GAG Ikeros Ty1-GAG 17 0.11
Ikeros Ty1-INT Ikeros Ty1-INT 35 0.22
Ikeros Ty1-PROT Ikeros Ty1-PROT 17 0.11
Ikeros Ty1-RT Ikeros Ty1-RT 28 0.18

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2660 3 0.3
1000 2 0.2
11 1 0.000806
242 1 0.0444
1510 1 0.0833