Cluster no. 142

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Cluster is part of supercluster: 85

Cluster characteristics:

size 318
size_real 318
ecount 519
supercluster 85
annotations_summary 0.31% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.148014440433213
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00314465408805031
satellite_probability 1.62805081405569e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 92
S1 107
S3 119
comparative analysis - number of edges between species:
S2 S1 S3
S2 46.0 40.5 63
S1 40.5 54.0 69
S3 63.0 69.0 74
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.07 0.86 1.060
S1 0.86 1.05 1.060
S3 1.06 1.06 0.905

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RT Ale Ty1-RT 1 0.0031

clusters connected through mates:

Cluster Number of shared
read pairs		 k
97 16 0.0302
790 4 0.0321
2070 3 0.0247
1300 2 0.0164
2410 2 0.0165
26000 2 0.0168
49400 2 0.0168
4 1 0.000421
9 1 0.000744
13 1 0.000652
24 1 0.000818
73 1 0.00183
433 1 0.00746
515 1 0.00763
1150 1 0.00816
2520 1 0.00823
3400 1 0.00833
3410 1 0.00833
4780 1 0.00837
5040 1 0.0083
7130 1 0.00833
7270 1 0.00833
9490 1 0.00837
10400 1 0.00837
13100 1 0.00844
14200 1 0.00837
15300 1 0.0084
18900 1 0.0084
29800 1 0.0084
32000 1 0.0084
33600 1 0.0084
33900 1 0.0084
34500 1 0.0084
35500 1 0.0084
40100 1 0.0084
42000 1 0.0084
45400 1 0.0084
45800 1 0.0084
48300 1 0.0084
48900 1 0.0084
52000 1 0.0084

CL142 ----> CL97

image

No. of shared pairs: :16