Cluster no. 177

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Cluster is part of supercluster: 119

Cluster characteristics:

size 190
size_real 190
ecount 897
supercluster 119
annotations_summary 96.32% organelle/plastid
pair_completeness 0.881188118811881
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00526315789473684
satellite_probability 1.10061933590066e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 60
S1 63
S3 67
comparative analysis - number of edges between species:
S2 S1 S3
S2 77 93 98
S1 93 105 108
S3 98 108 118
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.962 1.020 1.010
S1 1.020 1.010 0.976
S3 1.010 0.976 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 183 0.96

clusters connected through mates:

Cluster Number of shared
read pairs		 k
237 6 0.5
109 1 0.0308
7780 1 0.125