Cluster no. 96

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Cluster is part of supercluster: 14

Cluster characteristics:

size 1341
size_real 1341
ecount 26385
supercluster 14
annotations_summary 0.07% Class_II/Subclass_2/Helitron:Helitron-HEL2
pair_completeness 0.388198757763975
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00223713646532438
satellite_probability 7.03651426040455e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 455
S1 468
S3 418
comparative analysis - number of edges between species:
S2 S1 S3
S2 3330 3230 2870
S1 3230 3040 2730
S3 2870 2730 2340
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.987 1.000 1.010
S1 1.000 0.991 1.010
S3 1.010 1.010 0.979

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Helitron Helitron-HEL2 Helitron Helitron-HEL2 1 0.00075

clusters with similarity:

Cluster Number of similarity hits
20 4

clusters connected through mates:

Cluster Number of shared
read pairs
k
20 73 0.128
9 4 0.00263
2490 4 0.0134
2620 4 0.0134
3470 4 0.0134
23 3 0.00277
2460 3 0.01
5180 3 0.0101
6550 3 0.0101
13400 3 0.0101
14400 3 0.0101
8 2 0.0023
16 2 0.00103
17 2 0.00132
24 2 0.00143
38 2 0.00163
41 2 0.0043
76 2 0.00296
3980 2 0.00671
5400 2 0.00672
6800 2 0.00672
7230 2 0.00672
10500 2 0.00673
14900 2 0.00675
16400 2 0.00675
19100 2 0.00675
20800 2 0.00675
25100 2 0.00675
25800 2 0.00675
26500 2 0.00675
28600 2 0.00675
33900 2 0.00675
35800 2 0.00675
36500 2 0.00675
40300 2 0.00675
40600 2 0.00675
50400 2 0.00675
1 1 0.000436
5 1 0.000409
10 1 0.000654
11 1 0.000654
12 1 0.000501
13 1 0.000584
18 1 0.000463
22 1 0.000787
29 1 0.000835
32 1 7e-04
35 1 0.000501
40 1 0.00109
48 1 0.00124
50 1 0.00113
59 1 0.00141
64 1 0.00166
65 1 0.00212
67 1 0.0015
75 1 0.00139
77 1 0.00219
81 1 0.00241
91 1 0.00237
100 1 0.00248
114 1 0.00172
1150 1 0.00332
1470 1 0.00333
2000 1 0.00337
2630 1 0.00334
4040 1 0.00338
4480 1 0.00336
4890 1 0.00336
5370 1 0.00336
5620 1 0.00336
5900 1 0.00337
6520 1 0.00337
6530 1 0.00336
6680 1 0.00337
6870 1 0.00337
7650 1 0.00336
8010 1 0.00337
8150 1 0.00337
8590 1 0.00338
9330 1 0.00337
9850 1 0.00337
9880 1 0.00338
9970 1 0.00337
10400 1 0.00338
11200 1 0.00337
11200 1 0.00337
12100 1 0.00337
12100 1 0.00337
12700 1 0.00337
13300 1 0.00337
13700 1 0.00337
13800 1 0.00337
13900 1 0.00337
14000 1 0.00337
15800 1 0.00337
17900 1 0.00337
18700 1 0.00337
19700 1 0.00337
21800 1 0.00337
22000 1 0.00337
24000 1 0.00337
25000 1 0.00337
25400 1 0.00337
25800 1 0.00337
26800 1 0.00337
29900 1 0.00337
31700 1 0.00337
31800 1 0.00337
32600 1 0.00337
32700 1 0.00337
33800 1 0.00337
34600 1 0.00337
35000 1 0.00337
35300 1 0.00337
37600 1 0.00337
41500 1 0.00337
41600 1 0.00337
43200 1 0.00337
44300 1 0.00337
45700 1 0.00337
46300 1 0.00337
48200 1 0.00337
49700 1 0.00337
50000 1 0.00337
50400 1 0.00337
51200 1 0.00337
51300 1 0.00337

CL96 ----> CL20

image

No. of shared pairs: :73