Cluster no. 118

Cluster no. 118

Go back to cluster table

Cluster is part of supercluster: 62

Cluster characteristics:

size	614
size_real	614
ecount	8939
supercluster	62
annotations_summary
pair_completeness	0.535
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.231270358306189
satellite_probability	1.71612003452372e-11
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	183
S1	228
S3	203

comparative analysis - number of edges between species:

	S2	S1	S3
S2	850	1060	826
S1	1060	1350	1050
S3	826	1050	870

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.010	1.000	0.984
S1	1.000	1.010	0.985
S3	0.984	0.985	1.040

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

14	173
6	52
13	5
24	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

14	48	0.0264
6	38	0.0249
106	14	0.06
13	13	0.00862
16	10	0.00572
1150	4	0.0406
6480	3	0.0316
6530	3	0.0316
24	2	0.00167
39	2	0.00176
2820	2	0.0207
5760	2	0.0211
7320	2	0.0211
4	1	0.000425
18	1	0.000512
42	1	0.000903
50	1	0.00146
64	1	0.0025
180	1	0.0087
1370	1	0.0102
11800	1	0.0106
15800	1	0.0106
29500	1	0.0106
34100	1	0.0106
45500	1	0.0106

CL118 ----> CL14

No. of shared pairs: :48

CL118 ----> CL6

No. of shared pairs: :38

CL118 ----> CL106

No. of shared pairs: :14

CL118 ----> CL13

No. of shared pairs: :13

CL118 ----> CL16

No. of shared pairs: :10