Cluster no. 136

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Cluster is part of supercluster: 80

Cluster characteristics:

size 352
size_real 352
ecount 2221
supercluster 80
annotations_summary
pair_completeness 0.266187050359712
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00284090909090909
satellite_probability 1.3492571833667e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 118
S1 108
S3 126
comparative analysis - number of edges between species:
S2 S1 S3
S2 217 230 241
S1 230 248 272
S3 241 272 269
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.020 0.991 0.994
S1 0.991 0.978 1.030
S3 0.994 1.030 0.977

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
2 168

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2 75 0.0328
525 7 0.0622
859 7 0.0639
1430 3 0.0279
5860 3 0.0288
2300 2 0.0189
2960 2 0.0192
3070 2 0.019
4350 2 0.0191
31 1 0.000765
686 1 0.00901
2010 1 0.00939
2890 1 0.00948
4660 1 0.00966
5970 1 0.00971
8940 1 0.00966
10400 1 0.00966
11700 1 0.00966
12800 1 0.00966
17900 1 0.00971
19600 1 0.00971
20400 1 0.00971
22400 1 0.00971
27800 1 0.00971
30800 1 0.00971
36300 1 0.00971
40300 1 0.00971
43400 1 0.00971
47300 1 0.00971
50500 1 0.00971
50600 1 0.00971
50700 1 0.00971
50800 1 0.00971
51600 1 0.00971

CL136 ----> CL2

image

No. of shared pairs: :75