Cluster no. 35

Cluster no. 35

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Cluster is part of supercluster: 1

Cluster characteristics:

size	5451
size_real	5451
ecount	681387
supercluster	1
annotations_summary	0.04% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.02% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness	0.231029810298103
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00385250412768299
satellite_probability	1.51337771202e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1840
S1	1790
S3	1820

comparative analysis - number of edges between species:

	S2	S1	S3
S2	76700	74500	77400
S1	74500	72100	75300
S3	77400	75300	78100

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	1.000	0.999
S1	1.000	0.997	1.000
S3	0.999	1.000	0.999

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.00018

SIRE Ty1-RT SIRE Ty1-RT 2 0.00037

CRM Ty3-RT CRM Ty3-RT 1 0.00018

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 1 0.00018

clusters with similarity:

Cluster	Number of similarity hits

18	58000
5	32400

clusters connected through mates:

Cluster	Number of shared read pairs	k

5	1660	0.431
18	1470	0.411
74	24	0.00903
39	18	0.00655
7	16	0.00416
4	5	0.00126
12	4	0.00118
31	4	0.00138
42	4	0.00147
8	3	0.00132
9	3	0.00102
34	3	0.00152
37	3	0.00106
40	3	0.00129
11	2	0.000681
2	1	0.000257
6	1	0.000319
13	1	0.000321
16	1	0.000298
17	1	0.000342
21	1	0.000401
22	1	0.000373
25	1	0.000389
27	1	0.000345
30	1	0.000359
38	1	0.000379
44	1	0.000397
46	1	0.000438
48	1	0.000451
60	1	0.000472
76	1	0.00048
78	1	0.000532
80	1	0.000409
86	1	0.000527
88	1	0.000515
90	1	0.000475
92	1	0.000499
96	1	0.000501
171	1	0.000584
175	1	0.000564
218	1	0.00057
238	1	0.000578
240	1	0.000578
678	1	0.000584
5010	1	0.000587
6410	1	0.000587
21700	1	0.000587
31000	1	0.000587
31100	1	0.000587
35700	1	0.000587
38200	1	0.000587
40000	1	0.000587
41500	1	0.000587
45900	1	0.000587
50100	1	0.000587

CL35 ----> CL5

No. of shared pairs: :1660

CL35 ----> CL18

No. of shared pairs: :1466

CL35 ----> CL74

No. of shared pairs: :24

CL35 ----> CL39

No. of shared pairs: :18

CL35 ----> CL7

No. of shared pairs: :16