Cluster no. 21

Cluster no. 21

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Cluster is part of supercluster: 3

Cluster characteristics:

size	6789
size_real	6789
ecount	126129
supercluster	3
annotations_summary	0.34% organelle/mitochondria 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.01% organelle/plastid 0.01% Class_I/LTR/Ty1_copia/Bianca:Ty1-RT 0.01% Class_I/LINE:LINE-RT 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
pair_completeness	0.621447336995462
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.11945794667845
satellite_probability	8.59422187357409e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	2210
S1	2310
S3	2260

comparative analysis - number of edges between species:

	S2	S1	S3
S2	13900	13700	14200
S1	13700	13600	14000
S3	14200	14000	14700

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	0.999	0.999
S1	0.999	1.000	0.997
S3	0.999	0.997	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 23 0.00339

plastid plastid 1 0.00015

LINE LINE-RT LINE LINE-RT 1 0.00015

Ale Ty1-RT Ale Ty1-RT 1 0.00015

Bianca Ty1-RT Bianca Ty1-RT 1 0.00015

Tekay Ty3-CHDII Tekay Ty3-CHDII 2 0.00029

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 0.00015

clusters with similarity:

Cluster	Number of similarity hits

60	458
38	185
49	52
33	50
12	46
129	30
67	3
9	1
45	1
371	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

60	232	0.192
38	215	0.124
33	113	0.0682
12	51	0.0205
49	39	0.0286
129	38	0.0449
67	21	0.018
371	13	0.0161
11	10	0.00493
9	8	0.00396
862	8	0.01
4	7	0.00229
42	7	0.00387
924	7	0.00878
74	5	0.00286
80	5	0.00325
24	4	0.00211
39	4	0.00218
46	4	0.00291
5550	4	0.00503
8	3	0.0022
2980	3	0.00377
5160	3	0.00378
5280	3	0.00378
6470	3	0.00378
7350	3	0.00378
11800	3	0.00378
1	2	0.000716
20	2	0.00187
25	2	0.00121
36	2	0.00156
37	2	0.00105
44	2	0.00124
75	2	0.00164
83	2	0.00198
99	2	0.00228
119	2	0.00213
125	2	0.00219
1960	2	0.00251
4750	2	0.00252
6720	2	0.00252
9210	2	0.00252
13100	2	0.00252
13600	2	0.00252
17700	2	0.00252
20300	2	0.00252
29200	2	0.00252
30600	2	0.00252
36200	2	0.00252
38200	2	0.00252
49100	2	0.00252
2	1	0.000336
5	1	0.00034
7	1	0.00034
13	1	0.000453
14	1	0.000398
17	1	0.000497
18	1	0.000377
28	1	0.000486
29	1	0.00059
35	1	0.000401
43	1	0.000857
47	1	0.00093
64	1	0.00091
68	1	0.000705
72	1	0.000883
79	1	0.000857
82	1	0.00118
153	1	0.00113
292	1	0.00125
308	1	0.00125
377	1	0.00124
831	1	0.00126
847	1	0.00125
1720	1	0.00126
2070	1	0.00126
2560	1	0.00126
2760	1	0.00126
3630	1	0.00126
3650	1	0.00126
4090	1	0.00126
5720	1	0.00126
5900	1	0.00126
6220	1	0.00126
6240	1	0.00126
6360	1	0.00126
6970	1	0.00126
7020	1	0.00126
8660	1	0.00126
8690	1	0.00126
8920	1	0.00126
11000	1	0.00126
11400	1	0.00126
11600	1	0.00126
11600	1	0.00126
11900	1	0.00126
13200	1	0.00126
14500	1	0.00126
21000	1	0.00126
21100	1	0.00126
21500	1	0.00126
21800	1	0.00126
22100	1	0.00126
23600	1	0.00126
27900	1	0.00126
28000	1	0.00126
28500	1	0.00126
32200	1	0.00126
33600	1	0.00126
36100	1	0.00126
36300	1	0.00126
36500	1	0.00126
41200	1	0.00126
41400	1	0.00126
45200	1	0.00126
47500	1	0.00126
49500	1	0.00126
50500	1	0.00126
51200	1	0.00126

CL21 ----> CL60

No. of shared pairs: :232

CL21 ----> CL38

No. of shared pairs: :215

CL21 ----> CL33

No. of shared pairs: :113

CL21 ----> CL12

No. of shared pairs: :51

CL21 ----> CL49

No. of shared pairs: :39

CL21 ----> CL129

No. of shared pairs: :38

CL21 ----> CL67

No. of shared pairs: :21

CL21 ----> CL371

No. of shared pairs: :13

CL21 ----> CL11

No. of shared pairs: :10