Cluster no. 89

Cluster no. 89

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Cluster is part of supercluster: 2

Cluster characteristics:

size	1893
size_real	1893
ecount	31429
supercluster	2
annotations_summary
pair_completeness	0.606960950764007
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00211304807184363
satellite_probability	6.64175142550315e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	632
S1	600
S3	661

comparative analysis - number of edges between species:

	S2	S1	S3
S2	3650	3570	3450
S1	3570	3590	3430
S3	3450	3430	3280

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.010	0.994	1.000
S1	0.994	1.010	1.000
S3	1.000	1.000	0.999

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

17	156
6	41
14	5
3	1
12	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

17	156	0.107
6	121	0.0728
3	10	0.00562
2210	6	0.0255
14	3	0.00154
1000	3	0.0127
2010	3	0.0128
5150	3	0.0128
46	2	0.00246
6930	2	0.00857
11600	2	0.00858
13500	2	0.00858
18600	2	0.0086
22300	2	0.0086
38100	2	0.0086
38400	2	0.0086
48300	2	0.0086
13	1	0.000607
37	1	0.000741
39	1	0.000782
50	1	0.00121
64	1	0.00186
69	1	0.00198
286	1	0.00403
523	1	0.00418
6880	1	0.00428
18300	1	0.0043
27200	1	0.0043
38300	1	0.0043
42200	1	0.0043

CL89 ----> CL17

No. of shared pairs: :156

CL89 ----> CL6

No. of shared pairs: :121

CL89 ----> CL3

No. of shared pairs: :10