Cluster no. 138

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Cluster is part of supercluster: 72

Cluster characteristics:

size 349
size_real 349
ecount 981
supercluster 72
annotations_summary
pair_completeness 0.727722772277228
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00286532951289398
satellite_probability 9.81425038973844e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 108
S1 108
S3 133
comparative analysis - number of edges between species:
S2 S1 S3
S2 101 88 111
S1 88 87 116
S3 111 116 164
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.100 0.991 0.930
S1 0.991 1.010 0.999
S3 0.930 0.999 1.060

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
245 20 0.404
524 7 0.179
85 5 0.023
559 3 0.0923
3020 3 0.102
2890 2 0.0667
40700 2 0.0702
51900 2 0.0702
46 1 0.00164
59 1 0.00227
1240 1 0.0312
9890 1 0.0345

CL138 ----> CL245

image

No. of shared pairs: :20