Cluster no. 109

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Cluster is part of supercluster: 54

Cluster characteristics:

size 845
size_real 845
ecount 6332
supercluster 54
annotations_summary 100.00% organelle/plastid
0.12% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.88195991091314
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00118343195266272
satellite_probability 4.91298606542926e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 281
S1 274
S3 290
comparative analysis - number of edges between species:
S2 S1 S3
S2 682 666 718
S1 666 661 736
S3 718 736 750
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 0.989 0.999
S1 0.989 0.984 1.020
S3 0.999 1.020 0.978

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 845 1.0000
Ale Ty1-RT Ale Ty1-RT 1 0.0012

clusters connected through mates:

Cluster Number of shared
read pairs		 k
112 10 0.182
382 10 0.286
498 4 0.127
10 1 0.000793
25 1 0.00112
38 1 0.00104
51 1 0.00277
120 1 0.0217
121 1 0.0167
177 1 0.0308
260 1 0.0303
308 1 0.0312
1270 1 0.0317
5040 1 0.0345

CL109 ----> CL112

image

No. of shared pairs: :10

CL109 ----> CL382

image

No. of shared pairs: :10