Cluster no. 161

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Cluster is part of supercluster: 104

Cluster characteristics:

size 216
size_real 216
ecount 3828
supercluster 104
annotations_summary
pair_completeness 0.293413173652695
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00462962962962963
satellite_probability 1.24960682050603e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 66
S1 62
S3 88
comparative analysis - number of edges between species:
S2 S1 S3
S2 282 306 474
S1 306 305 478
S3 474 478 722
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.955 1.010 1.020
S1 1.010 0.983 1.000
S3 1.020 1.000 0.985

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
3 2 0.00125
13 2 0.00136
40 2 0.00295
6 1 0.000671
10 1 0.000773
11 1 0.000773
14 1 0.000561
16 1 0.000583
17 1 0.000782
32 1 0.000839
33 1 0.00108
42 1 0.000931
45 1 0.00202
68 1 0.00146
76 1 0.00228
83 1 0.00364
123 1 0.0058
233 1 0.0101
483 1 0.014
1140 1 0.016
1310 1 0.0156
2040 1 0.0163
3150 1 0.0164
3180 1 0.0164
10500 1 0.0165
19300 1 0.0167
38300 1 0.0167
49300 1 0.0167