Cluster no. 103

Cluster no. 103

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Cluster is part of supercluster: 48

Cluster characteristics:

size	964
size_real	964
ecount	5352
supercluster	48
annotations_summary	0.10% organelle/plastid
pair_completeness	0.483076923076923
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00103734439834025
satellite_probability	3.21043016719236e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	308
S1	333
S3	323

comparative analysis - number of edges between species:

	S2	S1	S3
S2	515	576	574
S1	576	642	632
S3	574	632	630

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.994	1.000	1.000
S1	1.000	1.000	0.996
S3	1.000	0.996	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.001

clusters with similarity:

Cluster	Number of similarity hits

1

26

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	106	0.0489
38	4	0.00363
1450	4	0.0232
3260	4	0.0234
5190	3	0.0176
6430	3	0.0176
37	2	0.00155
1240	2	0.0115
2380	2	0.0117
4530	2	0.0117
9560	2	0.0118
9740	2	0.0118
11500	2	0.0118
12500	2	0.0118
14900	2	0.0118
28100	2	0.0118
29300	2	0.0118
40400	2	0.0118
43900	2	0.0118
49700	2	0.0118
51600	2	0.0118
24	1	0.000786
40	1	0.00127
479	1	0.00548
2030	1	0.00587
3020	1	0.00585
7260	1	0.00588
10300	1	0.0059
10400	1	0.0059
13500	1	0.00593
13800	1	0.00593
14500	1	0.00592
17600	1	0.00592
17900	1	0.00592
27200	1	0.00592
33800	1	0.00592
40500	1	0.00592
52400	1	0.00592

CL103 ----> CL1

No. of shared pairs: :106