Cluster no. 144

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Cluster is part of supercluster: 87

Cluster characteristics:

size 309
size_real 309
ecount 813
supercluster 87
annotations_summary 0.32% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
pair_completeness 0.450704225352113
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00323624595469256
satellite_probability 4.28848727092841e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 116
S1 91
S3 102
comparative analysis - number of edges between species:
S2 S1 S3
S2 132 77 107
S1 77 71 75
S3 107 75 92
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.070 0.888 1.000
S1 0.888 1.160 0.998
S3 1.000 0.998 0.996

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TAR Ty1-INT TAR Ty1-INT 1 0.0032

clusters connected through mates:

Cluster Number of shared
read pairs		 k
749 6 0.0902
4210 5 0.082
1280 4 0.064
1480 3 0.0469
281 2 0.0241
14300 2 0.0333
26900 2 0.0336
31800 2 0.0336
11 1 0.000774
37 1 0.00085
396 1 0.0132
593 1 0.015
1180 1 0.0156
4310 1 0.0164
5060 1 0.0167
7950 1 0.0167
10200 1 0.0167
13300 1 0.0167
18100 1 0.0168
22000 1 0.0168
37100 1 0.0168
37900 1 0.0168