Cluster no. 202

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Cluster is part of supercluster: 144

Cluster characteristics:

size 134
size_real 134
ecount 248
supercluster 144
annotations_summary 0.75% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
pair_completeness 0.185840707964602
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00746268656716418
satellite_probability 8.87680651322255e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 42
S1 48
S3 44
comparative analysis - number of edges between species:
S2 S1 S3
S2 21.0 25.5 34.5
S1 25.5 21.0 28.0
S3 34.5 28.0 30.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.794 1.050 1.14
S1 1.050 0.938 1.01
S3 1.140 1.010 0.87

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatV Ty3-RH TatV Ty3-RH 1 0.0075

clusters connected through mates:

Cluster Number of shared
read pairs		 k
172 16 0.16
1350 5 0.1
357 4 0.0635
1700 4 0.0784
1580 3 0.0588
3860 3 0.0619
4370 2 0.0421
11600 2 0.0421
13 1 0.000684
56 1 0.001
75 1 0.00213
266 1 0.0179
3170 1 0.0208
3380 1 0.0204
4040 1 0.0206
7850 1 0.0211
13000 1 0.0211
27400 1 0.0213
29300 1 0.0213

CL202 ----> CL172

image

No. of shared pairs: :16