Cluster no. 167

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Cluster is part of supercluster: 109

Cluster characteristics:

size 208
size_real 208
ecount 488
supercluster 109
annotations_summary 28.85% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.96% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
pair_completeness 0.276073619631902
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00480769230769231
satellite_probability 1.30056036622834e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 68
S1 71
S3 69
comparative analysis - number of edges between species:
S2 S1 S3
S2 41.0 43.5 40.5
S1 43.5 60.0 71.5
S3 40.5 71.5 76.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.280 0.970 0.841
S1 0.970 0.956 1.060
S3 0.841 1.060 1.050

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-PROT Reina Ty3-PROT 2 0.0096
Tekay Ty3-PROT Tekay Ty3-PROT 60 0.2885

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4770 2 0.0325
49600 2 0.0333
11 1 0.000773
38 1 0.00101
46 1 0.00156
3210 1 0.0164
4850 1 0.0165
10400 1 0.0165
13600 1 0.0168
13800 1 0.0165
19800 1 0.0167
21700 1 0.0167
38900 1 0.0167
45100 1 0.0167