Cluster no. 143

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Cluster is part of supercluster: 86

Cluster characteristics:

size 317
size_real 317
ecount 1221
supercluster 86
annotations_summary 41.64% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
27.13% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
6.31% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.63% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
pair_completeness 0.704301075268817
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00315457413249211
satellite_probability 1.64859681984477e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 87
S1 113
S3 117
comparative analysis - number of edges between species:
S2 S1 S3
S2 90 120 123
S1 120 161 168
S3 123 168 148
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.991 0.980 1.030
S1 0.980 0.975 1.040
S3 1.030 1.040 0.938

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 20 0.0631
Tekay Ty3-INT Tekay Ty3-INT 132 0.4164
Reina Ty3-RH Reina Ty3-RH 2 0.0063
Tekay Ty3-RH Tekay Ty3-RH 86 0.2713

clusters connected through mates:

Cluster Number of shared
read pairs		 k
315 14 0.364
340 6 0.135
882 4 0.121
16 1 0.000594
25 1 0.00112
46 1 0.00164
13100 1 0.0357

CL143 ----> CL315

image

No. of shared pairs: :14