Cluster no. 166

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Cluster is part of supercluster: 46

Cluster characteristics:

size 208
size_real 208
ecount 788
supercluster 46
annotations_summary
pair_completeness 0.223529411764706
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00480769230769231
satellite_probability 1.54486496583492e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 65
S1 67
S3 76
comparative analysis - number of edges between species:
S2 S1 S3
S2 91 88.0 89.0
S1 88 68.0 83.5
S3 89 83.5 108.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.998 1.080 0.933
S1 1.080 0.934 0.979
S3 0.933 0.979 1.080

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
111 23 0.13
592 4 0.0541
80 2 0.00247
178 2 0.0203
1640 2 0.0282
5910 2 0.0294
45000 2 0.0299
12 1 0.000566
24 1 0.000855
36 1 0.00179
40 1 0.00146
51 1 0.0025
69 1 0.00295
83 1 0.00355
149 1 0.0105
1610 1 0.0143
1780 1 0.0143
3310 1 0.0145
7710 1 0.0147
8000 1 0.0148
10400 1 0.0148
18900 1 0.0149
20800 1 0.0149
21200 1 0.0149
21300 1 0.0149
22200 1 0.0149
28300 1 0.0149
33400 1 0.0149
38400 1 0.0149
41400 1 0.0149
46700 1 0.0149
50300 1 0.0149

CL166 ----> CL111

image

No. of shared pairs: :23