Cluster no. 173

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Cluster is part of supercluster: 115

Cluster characteristics:

size 198
size_real 198
ecount 617
supercluster 115
annotations_summary 7.58% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
2.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.466666666666667
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0707070707070707
satellite_probability 3.08924054458714e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 69
S1 59
S3 70
comparative analysis - number of edges between species:
S2 S1 S3
S2 93.0 47.0 85.5
S1 47.0 49.0 63.5
S3 85.5 63.5 83.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.130 0.806 1.010
S1 0.806 1.190 1.060
S3 1.010 1.060 0.951

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 4 0.020
TatV Ty3-GAG TatV Ty3-GAG 15 0.076

clusters with similarity:

Cluster Number of similarity hits
50 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
105 4 0.0196
64 2 0.00584
16000 2 0.0541
17500 2 0.0541
39 1 0.000924
50 1 0.00159
92 1 0.00297
5480 1 0.0263
5550 1 0.0263
27600 1 0.027
28000 1 0.027