Cluster no. 63

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Cluster is part of supercluster: 5

Cluster characteristics:

size	3167
size_real	3167
ecount	85351
supercluster	5
annotations_summary	49.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 1.52% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 0.44% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.22% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH 0.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
pair_completeness	0.751659292035398
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000315756236185665
satellite_probability	6.84243327814155e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1040
S1	1050
S3	1080

comparative analysis - number of edges between species:

	S2	S1	S3
S2	9190	9410	9400
S1	9410	9640	9570
S3	9400	9570	9770

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	1.000	0.997
S1	1.000	1.000	0.993
S3	0.997	0.993	1.010

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 14 0.00442

TatV Ty3-INT TatV Ty3-INT 1553 0.49037

CRM Ty3-PROT CRM Ty3-PROT 1 0.00032

CRM Ty3-RH CRM Ty3-RH 7 0.00221

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 6 0.00189

TatV Ty3-aRH TatV Ty3-aRH 48 0.01516

clusters with similarity:

Cluster	Number of similarity hits

8	429
57	235
316	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

57	167	0.344
8	164	0.206
606	13	0.056
328	5	0.0214
316	4	0.017
1370	3	0.0131
2750	3	0.0132
5460	2	0.00883
13500	2	0.00885
31100	2	0.00887
31300	2	0.00887
2	1	0.000415
3	1	0.000565
4	1	0.000402
6	1	0.000604
39	1	0.000787
40	1	0.00119
47	1	0.00197
48	1	0.00136
54	1	0.00223
56	1	0.00085
69	1	0.00201
75	1	0.00154
90	1	0.0016
221	1	0.00404
269	1	0.0043
1370	1	0.00438
2670	1	0.00441
7000	1	0.00442
7490	1	0.00443
10200	1	0.00442
27400	1	0.00443
30200	1	0.00443

CL63 ----> CL57

No. of shared pairs: :167

CL63 ----> CL8

No. of shared pairs: :164

CL63 ----> CL606

No. of shared pairs: :13