Cluster no. 86

Cluster no. 86

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Cluster is part of supercluster: 7

Cluster characteristics:

size	1971
size_real	1971
ecount	75320
supercluster	7
annotations_summary	8.88% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness	0.670338983050847
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0060882800608828
satellite_probability	1.9456658316349e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	620
S1	672
S3	679

comparative analysis - number of edges between species:

	S2	S1	S3
S2	7670	7890	8480
S1	7890	8340	8690
S3	8480	8690	9180

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.999	0.992	1.010
S1	0.992	1.010	0.997
S3	1.010	0.997	0.995

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

SIRE Ty1-GAG SIRE Ty1-GAG 175 0.08879

Tekay Ty3-INT Tekay Ty3-INT 1 0.00051

clusters with similarity:

Cluster	Number of similarity hits

53	156
73	11
102	11
5	1
145	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

53	70	0.111
145	24	0.0839
102	13	0.0518
73	12	0.0192
1560	5	0.025
3500	4	0.0203
12	3	0.00158
33	3	0.00283
2140	3	0.0152
3250	3	0.0152
7	2	0.000855
14	2	0.00104
16	2	0.00108
558	2	0.00973
585	2	0.0099
754	2	0.01
2550	2	0.0102
2560	2	0.0101
8770	2	0.0102
9680	2	0.0102
12400	2	0.0102
17000	2	0.0102
29200	2	0.0102
33000	2	0.0102
44900	2	0.0102
45700	2	0.0102
1	1	0.000456
2	1	0.00042
4	1	0.000407
5	1	0.000426
6	1	0.000615
9	1	0.000704
10	1	7e-04
17	1	0.000707
25	1	0.000943
32	1	0.000753
34	1	0.00213
35	1	0.000527
36	1	0.00146
37	1	0.000762
41	1	0.00275
42	1	0.000827
45	1	0.00159
47	1	0.00209
51	1	0.00189
54	1	0.00239
56	1	0.000872
58	1	0.00191
59	1	0.00165
60	1	0.00164
61	1	0.00287
67	1	0.00176
83	1	0.00244
85	1	0.0026
88	1	0.0023
95	1	0.00247
101	1	0.00302
147	1	0.00482
176	1	0.00391
350	1	0.00495
381	1	0.00471
458	1	0.00481
1200	1	0.00505
1400	1	0.00503
1510	1	0.00505
1780	1	0.00506
2330	1	0.00504
2390	1	0.00509
3950	1	0.0051
4010	1	0.00508
4200	1	0.00508
6270	1	0.00509
6520	1	0.00509
6720	1	0.00509
6730	1	0.00509
6910	1	0.00512
8530	1	0.0051
9400	1	0.0051
10300	1	0.0051
11400	1	0.0051
11900	1	0.00513
12200	1	0.0051
12900	1	0.00513
12900	1	0.00513
13000	1	0.0051
13500	1	0.0051
13600	1	0.00513
15100	1	0.00512
19200	1	0.00512
22400	1	0.00512
23600	1	0.00512
24900	1	0.00512
29200	1	0.00512
30500	1	0.00512
33400	1	0.00512
33700	1	0.00512
37900	1	0.00512
39400	1	0.00512
40300	1	0.00512
41400	1	0.00512
44500	1	0.00512
45100	1	0.00512
46600	1	0.00512
50300	1	0.00512
51400	1	0.00512

CL86 ----> CL53

No. of shared pairs: :70

CL86 ----> CL145

No. of shared pairs: :24

CL86 ----> CL102

No. of shared pairs: :13

CL86 ----> CL73

No. of shared pairs: :12