Cluster no. 45

Cluster no. 45

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Cluster is part of supercluster: 19

Cluster characteristics:

size	4542
size_real	4542
ecount	80604
supercluster	19
annotations_summary	0.07% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT 0.04% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness	0.677872183228666
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.195948921180097
satellite_probability	2.636470770371e-13
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1440
S1	1530
S3	1570

comparative analysis - number of edges between species:

	S2	S1	S3
S2	7860	8660	8750
S1	8660	9510	9480
S3	8750	9480	9430

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.992	0.999	1.010
S1	0.999	1.000	0.999
S3	1.010	0.999	0.993

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 2 0.00044

TAR Ty1-PROT TAR Ty1-PROT 3 0.00066

Athila Ty3-INT Athila Ty3-INT 1 0.00022

clusters with similarity:

Cluster	Number of similarity hits

14	184
13	155
6	92
24	72
68	32
3	24
40	18
95	4
129	2
184	2
21	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

13	128	0.0691
14	101	0.0468
6	87	0.0466
40	61	0.0578
68	48	0.0452
95	25	0.0387
184	15	0.0318
2030	6	0.0136
16	5	0.00239
4	4	0.00148
9	4	0.00241
4050	4	0.00912
5440	4	0.00913
5560	4	0.00913
6490	4	0.00913
7130	4	0.00913
3	3	0.00151
12	3	0.0014
22	3	0.00213
24	3	0.00195
39	3	0.00202
6020	3	0.00685
8550	3	0.00686
12500	3	0.00686
8	2	0.00198
10	2	0.0012
17	2	0.00121
36	2	0.00215
37	2	0.00129
42	2	0.00138
48	2	0.00211
70	2	0.00268
75	2	0.00233
7740	2	0.00457
8560	2	0.00457
34700	2	0.00458
37900	2	0.00458
39500	2	0.00458
43000	2	0.00458
1	1	0.00041
15	1	0.00132
18	1	0.000435
20	1	0.00141
23	1	0.000817
25	1	0.000768
34	1	0.00141
38	1	0.000729
54	1	0.00152
56	1	0.00072
60	1	0.00118
67	1	0.00124
72	1	0.00129
74	1	0.000719
79	1	0.00123
86	1	0.00159
106	1	0.00173
161	1	0.00202
988	1	0.00228
3450	1	0.00228
3560	1	0.00228
3580	1	0.00228
3760	1	0.00228
4140	1	0.00229
5350	1	0.00228
7330	1	0.00229
7370	1	0.00228
8610	1	0.00229
11700	1	0.00229
11700	1	0.00229
15100	1	0.00229
17900	1	0.00229
23700	1	0.00229
26000	1	0.00229
27600	1	0.00229
33400	1	0.00229
40400	1	0.00229
51700	1	0.00229

CL45 ----> CL13

No. of shared pairs: :128

CL45 ----> CL14

No. of shared pairs: :101

CL45 ----> CL6

No. of shared pairs: :87

CL45 ----> CL40

No. of shared pairs: :61

CL45 ----> CL68

No. of shared pairs: :48

CL45 ----> CL95

No. of shared pairs: :25

CL45 ----> CL184

No. of shared pairs: :15