Cluster no. 49

Cluster no. 49

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Cluster is part of supercluster: 1

Cluster characteristics:

size	4445
size_real	4445
ecount	254487
supercluster	1
annotations_summary
pair_completeness	0.590909090909091
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0031496062992126
satellite_probability	8.75468016753053e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1440
S1	1520
S3	1500

comparative analysis - number of edges between species:

	S2	S1	S3
S2	26500	28100	27400
S1	28100	30200	29300
S3	27400	29300	28400

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	0.995	1.000
S1	0.995	1.000	1.000
S3	1.000	1.000	0.999

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

4	6140
12	623
11	340
21	52
33	43
121	34
130	34
22	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

4	316	0.112
12	306	0.135
33	65	0.0452
11	64	0.0354
130	48	0.0703
21	39	0.0286
121	23	0.038
22	5	0.00323
42	4	0.00252
8	3	0.00262
25	3	0.00209
67	3	0.00318
12500	3	0.00524
13800	3	0.00524
10	2	0.00111
13	2	0.00101
37	2	0.00118
13300	2	0.00349
17300	2	0.00349
37500	2	0.00349
50000	2	0.00349
3	1	0.000472
5	1	0.000367
9	1	0.000556
18	1	0.000411
20	1	0.00118
24	1	0.000597
39	1	0.000618
46	1	0.000866
59	1	0.00102
64	1	0.00114
74	1	0.000655
75	1	0.001
79	1	0.00106
80	1	0.00076
126	1	0.0016
156	1	0.00154
772	1	0.00173
1920	1	0.00174
2130	1	0.00174
2370	1	0.00174
2610	1	0.00174
2630	1	0.00174
5100	1	0.00175
7110	1	0.00175
9820	1	0.00175
12600	1	0.00175
17200	1	0.00175
20400	1	0.00175
22800	1	0.00175
28300	1	0.00175
29600	1	0.00175
32100	1	0.00175
42200	1	0.00175
43900	1	0.00175
45300	1	0.00175
45900	1	0.00175
46600	1	0.00175
47600	1	0.00175
51700	1	0.00175
51900	1	0.00175

CL49 ----> CL4

No. of shared pairs: :316

CL49 ----> CL12

No. of shared pairs: :306

CL49 ----> CL33

No. of shared pairs: :65

CL49 ----> CL11

No. of shared pairs: :64

CL49 ----> CL130

No. of shared pairs: :48

CL49 ----> CL21

No. of shared pairs: :39

CL49 ----> CL121

No. of shared pairs: :23