Cluster no. 26

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Cluster is part of supercluster: 1

Cluster characteristics:

size	6420
size_real	6420
ecount	1551567
supercluster	1
annotations_summary	0.03% Class_I/LTR/Ty1_copia/Bryco:Ty1-GAG 0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH 0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness	0.466088147978991
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0384735202492212
satellite_probability	7.1286263947812e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	2010
S1	2260
S3	2150

comparative analysis - number of edges between species:

	S2	S1	S3
S2	151000	172000	162000
S1	172000	194000	183000
S3	162000	183000	173000

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.998	1.000	1.000
S1	1.000	0.998	1.000
S3	1.000	1.000	0.999

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Bryco Ty1-GAG Bryco Ty1-GAG 2 0.00031

SIRE Ty1-GAG SIRE Ty1-GAG 1 0.00016

SIRE Ty1-RT SIRE Ty1-RT 1 0.00016

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 0.00016

Reina Ty3-RH Reina Ty3-RH 1 0.00016

clusters with similarity:

Cluster	Number of similarity hits

31	19500
7	19300
23	406
5	73
182	73
159	62

clusters connected through mates:

Cluster	Number of shared read pairs	k

31	977	0.412
7	895	0.27
23	127	0.0649
5	56	0.0169
182	29	0.024
159	24	0.0198
2	12	0.00357
37	5	0.00219
9	3	0.00125
11	3	0.00125
3	2	0.000737
4	2	0.000583
8	2	0.00115
22	2	0.000933
24	2	0.00088
25	2	0.000983
36	2	0.0012
72	2	0.00132
1070	2	0.00171
12800	2	0.00171
10	1	0.000416
12	1	0.000348
13	1	0.000387
15	1	0.000672
16	1	0.000354
18	1	0.00033
20	1	0.000693
28	1	0.000411
33	1	0.000492
38	1	0.000475
42	1	0.000458
46	1	0.000571
51	1	0.000665
52	1	0.000742
58	1	0.000667
66	1	0.000712
68	1	0.000557
73	1	0.000626
75	1	0.000628
78	1	0.000743
80	1	0.000523
84	1	0.000682
92	1	0.00068
105	1	0.000748
248	1	0.000844
293	1	0.000847
325	1	0.000838
499	1	0.00085
1540	1	0.000852
1580	1	0.000853
1880	1	0.000854
2910	1	0.000854
4310	1	0.000854
8460	1	0.000854
15400	1	0.000855
35400	1	0.000855
40500	1	0.000855
45400	1	0.000855
46900	1	0.000855