Cluster no. 59

Cluster no. 59

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Cluster is part of supercluster: 1

Cluster characteristics:

size	3480
size_real	3480
ecount	21222
supercluster	1
annotations_summary	0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
pair_completeness	0.616349280074315
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000862068965517241
satellite_probability	5.75854876097884e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1120
S1	1230
S3	1130

comparative analysis - number of edges between species:

	S2	S1	S3
S2	2180	2380	2140
S1	2380	2760	2510
S3	2140	2510	2240

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.030	0.987	0.985
S1	0.987	1.000	1.010
S3	0.985	1.010	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-RH Athila Ty3-RH 2 0.00057

clusters with similarity:

Cluster	Number of similarity hits

12	95
33	72

clusters connected through mates:

Cluster	Number of shared read pairs	k

12	182	0.0861
33	139	0.109
714	8	0.0191
2040	7	0.0168
501	6	0.0141
60	4	0.00484
937	4	0.0095
22	3	0.00216
2380	3	0.00721
5580	3	0.00723
13500	3	0.00724
8	2	0.00203
9	2	0.00122
18	2	0.000879
24	2	0.00132
56	2	0.00146
165	2	0.00446
1270	2	0.00478
1800	2	0.00481
3640	2	0.00481
6200	2	0.00482
6270	2	0.00482
7640	2	0.00482
9260	2	0.00483
18700	2	0.00483
20000	2	0.00483
25700	2	0.00483
26800	2	0.00483
27300	2	0.00483
29000	2	0.00483
40000	2	0.00483
46700	2	0.00483
51800	2	0.00483
5	1	0.00039
7	1	0.000391
10	1	0.000607
11	1	0.000607
13	1	0.000547
16	1	0.000484
19	1	0.00138
20	1	0.00145
25	1	0.000782
31	1	0.000618
38	1	0.000742
39	1	0.000685
40	1	0.000969
43	1	0.00127
47	1	0.00144
48	1	0.00108
49	1	0.00102
50	1	0.000995
58	1	0.00135
68	1	0.000963
70	1	0.00138
72	1	0.00133
74	1	0.000731
81	1	0.00188
86	1	0.00165
96	1	0.00141
130	1	0.00191
138	1	0.00227
139	1	0.0019
2200	1	0.0024
3840	1	0.00241
4410	1	0.00241
4570	1	0.00241
4750	1	0.00241
5360	1	0.00242
5850	1	0.00241
7440	1	0.00241
7960	1	0.00242
10200	1	0.00241
10500	1	0.00241
12600	1	0.00242
17200	1	0.00242
22300	1	0.00242
23700	1	0.00242
24400	1	0.00242
26800	1	0.00242
27100	1	0.00242
28600	1	0.00242
29300	1	0.00242
30600	1	0.00242
32500	1	0.00242
32600	1	0.00242
33800	1	0.00242
34300	1	0.00242
35000	1	0.00242
35200	1	0.00242
35200	1	0.00242
36800	1	0.00242
40500	1	0.00242
42000	1	0.00242
43100	1	0.00242
44400	1	0.00242
45100	1	0.00242
48900	1	0.00242
49300	1	0.00242
49500	1	0.00242
50200	1	0.00242
51900	1	0.00242

CL59 ----> CL12

No. of shared pairs: :182

CL59 ----> CL33

No. of shared pairs: :139