Cluster no. 9

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Cluster is part of supercluster: 4

Cluster characteristics:

size 9435
size_real 9435
ecount 681701
supercluster 4
annotations_summary 0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDCR
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.587582029278142
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0673025967143614
satellite_probability 1.2178960135698e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 2990
S1 3350
S3 3100
comparative analysis - number of edges between species:
S2 S1 S3
S2 67100 75700 70700
S1 75700 86700 80200
S3 70700 80200 74800
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.000 0.996 1.000
S1 0.996 1.000 0.999
S3 1.000 0.999 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-INT Ale Ty1-INT 4 0.00042
Tork Ty1-INT Tork Ty1-INT 1 0.00011
Angela Ty1-RT Angela Ty1-RT 1 0.00011
CRM Ty3-CHDCR CRM Ty3-CHDCR 1 0.00011
Reina Ty3-INT Reina Ty3-INT 1 0.00011
TatV Ty3-INT TatV Ty3-INT 2 0.00021
Tekay Ty3-RT Tekay Ty3-RT 1 0.00011

clusters with similarity:

Cluster Number of similarity hits
29 6960
69 819
43 615
72 475
71 219
54 125
78 78
44 33
70 3
11 1
13 1
17 1
21 1
42 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
29 818 0.384
43 279 0.174
72 127 0.0811
71 100 0.0672
78 81 0.0578
69 75 0.0501
54 52 0.0359
8 11 0.00612
24 11 0.00472
2 10 0.00293
10 10 0.00407
37 10 0.00427
13 9 0.00341
17 9 0.00368
6 8 0.00301
21 8 0.00396
28 8 0.00321
14 7 0.00237
16 7 0.00243
42 7 0.00312
73 7 0.00423
1 6 0.00186
3 6 0.00216
4 6 0.00172
7 6 0.00178
27 6 0.00248
11 5 0.00203
25 5 0.00239
31 5 0.00206
39 5 0.0022
44 5 0.00244
74 5 0.00229
5 4 0.00118
12 4 0.00137
20 4 0.00267
45 4 0.00241
56 4 0.00184
60 4 0.00244
64 4 0.00261
96 4 0.00263
22 3 0.00136
23 3 0.00149
26 3 0.00125
32 3 0.00127
34 3 0.002
35 3 0.00102
36 3 0.00175
38 3 0.00139
70 3 0.00195
75 3 0.00182
84 3 0.00197
95 3 0.00209
15 2 0.00129
40 2 0.00108
47 2 0.00133
48 2 0.00115
55 2 0.0013
59 2 0.00122
66 2 0.00137
79 2 0.00125
93 2 0.00137
134 2 0.00148
3550 2 0.00163
27000 2 0.00163
27300 2 0.00163
18 1 0.000324
30 1 0.000433
33 1 0.000478
46 1 0.000553
49 1 0.000556
50 1 0.00055
51 1 0.000641
52 1 0.000712
53 1 0.000602
62 1 0.000784
67 1 0.000626
68 1 0.00054
76 1 0.000623
80 1 0.000508
81 1 0.000744
85 1 0.000706
86 1 0.000704
88 1 0.000682
90 1 0.000614
91 1 0.000739
99 1 0.000764
106 1 0.000732
108 1 0.00077
119 1 0.000728
121 1 0.000794
141 1 0.000772
142 1 0.000744
147 1 0.000807
148 1 0.000763
151 1 0.000778
170 1 0.000798
193 1 0.000779
208 1 0.000802
215 1 0.000804
217 1 0.000811
234 1 0.000799
287 1 0.000804
389 1 0.000806
420 1 0.000807
457 1 0.00081
518 1 0.000811
537 1 0.000813
557 1 0.000812
562 1 0.000812
648 1 0.000809
688 1 0.000811
715 1 0.00081
735 1 0.000811
838 1 0.000811
1700 1 0.000813
1870 1 0.000814
2420 1 0.000814
2570 1 0.000814
2680 1 0.000814
2850 1 0.000814
2870 1 0.000814
2940 1 0.000814
3140 1 0.000814
3510 1 0.000814
3810 1 0.000816
4080 1 0.000814
4150 1 0.000815
4860 1 0.000814
5330 1 0.000815
6210 1 0.000815
6830 1 0.000815
6910 1 0.000815
7380 1 0.000815
8260 1 0.000815
9330 1 0.000816
10600 1 0.000815
11200 1 0.000815
11300 1 0.000815
11800 1 0.000815
12400 1 0.000815
13700 1 0.000815
19100 1 0.000815
20600 1 0.000815
23000 1 0.000815
26100 1 0.000815
26600 1 0.000815
28500 1 0.000815
29100 1 0.000815
29100 1 0.000815
29400 1 0.000815
29500 1 0.000815
30700 1 0.000815
32300 1 0.000815
32300 1 0.000815
37200 1 0.000815
39700 1 0.000815
47000 1 0.000815
48200 1 0.000815
49300 1 0.000815
49700 1 0.000815
51900 1 0.000815
52300 1 0.000815

CL9 ----> CL29

image

No. of shared pairs: :818

CL9 ----> CL43

image

No. of shared pairs: :279

CL9 ----> CL72

image

No. of shared pairs: :127

CL9 ----> CL71

image

No. of shared pairs: :100

CL9 ----> CL78

image

No. of shared pairs: :81

CL9 ----> CL69

image

No. of shared pairs: :75

CL9 ----> CL54

image

No. of shared pairs: :52

CL9 ----> CL8

image

No. of shared pairs: :11

CL9 ----> CL24

image

No. of shared pairs: :11

CL9 ----> CL2

image

No. of shared pairs: :10

CL9 ----> CL10

image

No. of shared pairs: :10

CL9 ----> CL37

image

No. of shared pairs: :10