Cluster no. 200

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Cluster is part of supercluster: 142

Cluster characteristics:

size 139
size_real 139
ecount 270
supercluster 142
annotations_summary
pair_completeness 0.43298969072165
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00719424460431655
satellite_probability 1.0041894271145e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 38
S1 55
S3 46
comparative analysis - number of edges between species:
S2 S1 S3
S2 26.0 30.5 25.5
S1 30.5 36.0 33.5
S3 25.5 33.5 29.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.040 1.000 0.954
S1 1.000 0.972 1.030
S3 0.954 1.030 1.010

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
566 10 0.247
247 6 0.102
913 5 0.149
2120 2 0.0635
7050 2 0.0678
7710 2 0.0678
6 1 0.000685
18 1 0.000529
411 1 0.025
687 1 0.0274
1970 1 0.0323
25000 1 0.0351
31700 1 0.0351
40100 1 0.0351
50900 1 0.0351

CL200 ----> CL566

image

No. of shared pairs: :10