Cluster no. 223
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Cluster is part of supercluster: 165
Cluster characteristics:
| size |
113 |
| size_real |
113 |
| ecount |
239 |
| supercluster |
165 |
| annotations_summary |
|
| pair_completeness |
0.228260869565217 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00884955752212389 |
| satellite_probability |
1.02273405921547e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
34 |
| S1 |
35 |
| S3 |
44 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
14.0 |
18.5 |
27.5 |
| S1 |
18.5 |
20.0 |
33.0 |
| S3 |
27.5 |
33.0 |
47.0 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
0.929 |
1.030 |
1.020 |
| S1 |
1.030 |
0.935 |
1.030 |
| S3 |
1.020 |
1.030 |
0.972 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 15 |
29 |
0.0816 |
| 19 |
3 |
0.00866 |
| 25 |
1 |
0.00111 |
| 105 |
1 |
0.0049 |
| 1220 |
1 |
0.0238 |
|
CL223 ----> CL15
No. of shared pairs: :29