Cluster no. 185

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Cluster is part of supercluster: 127

Cluster characteristics:

size 174
size_real 174
ecount 315
supercluster 127
annotations_summary
pair_completeness 0.183673469387755
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00574712643678161
satellite_probability 8.5036589366246e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 52
S1 56
S3 66
comparative analysis - number of edges between species:
S2 S1 S3
S2 43 27 34
S1 27 34 37
S3 34 37 42
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.250 0.834 0.911
S1 0.834 1.120 1.050
S3 0.911 1.050 1.040

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
160 12 0.0972
68 8 0.0117
755 6 0.0882
1740 3 0.0469
116 2 0.00922
3360 2 0.0317
8 1 0.00158
36 1 0.00181
2560 1 0.0157
3260 1 0.0159
3330 1 0.0159
3730 1 0.0159
4030 1 0.016
5990 1 0.0164
8480 1 0.0163
10300 1 0.0163
15900 1 0.0164
20500 1 0.0164
22600 1 0.0164
27400 1 0.0164
34300 1 0.0164
37700 1 0.0164
41900 1 0.0164
45900 1 0.0164
46900 1 0.0164
51300 1 0.0164

CL185 ----> CL160

image

No. of shared pairs: :12