Cluster no. 212

Go back to cluster table

Cluster is part of supercluster: 154

Cluster characteristics:

size 123
size_real 123
ecount 202
supercluster 154
annotations_summary 1.63% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-CHDII
pair_completeness 0.0789473684210527
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00813008130081301
satellite_probability 4.69086409232228e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 45
S1 40
S3 38
comparative analysis - number of edges between species:
S2 S1 S3
S2 25.0 24.5 26.5
S1 24.5 26.0 14.0
S3 26.5 14.0 21.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.874 1.010 1.150
S1 1.010 1.260 0.713
S3 1.150 0.713 1.120

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Galadriel Ty3-CHDII Galadriel Ty3-CHDII 2 0.016

clusters connected through mates:

Cluster Number of shared
read pairs		 k
128 3 0.0144
444 3 0.0429
3630 3 0.0541
257 2 0.0225
651 2 0.032
38600 2 0.0374
49200 2 0.0374
13 1 0.000681
64 1 0.00279
66 1 0.00347
2590 1 0.0179
3150 1 0.0183
3700 1 0.018
4880 1 0.0185
5260 1 0.0183
5360 1 0.0183
6950 1 0.0183
7680 1 0.0187
9710 1 0.0185
12000 1 0.0185
12900 1 0.0185
12900 1 0.0185
14000 1 0.0189
16300 1 0.0187
20600 1 0.0187
24600 1 0.0187