Cluster no. 176

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Cluster is part of supercluster: 118

Cluster characteristics:

size	194
size_real	194
ecount	420
supercluster	118
annotations_summary	23.71% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 0.52% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-PROT 0.52% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.52% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
pair_completeness	0.227848101265823
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00515463917525773
satellite_probability	1.02273405921547e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	55
S1	69
S3	70

comparative analysis - number of edges between species:

	S2	S1	S3
S2	34.0	39.5	35
S1	39.5	78.0	54
S3	35.0	54.0	51

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.210	0.892	0.968
S1	0.892	1.110	0.945
S3	0.968	0.945	1.090

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Reina Ty3-PROT Reina Ty3-PROT 1 0.0052

Tekay Ty3-PROT Tekay Ty3-PROT 46 0.2371

chromo-unclass Ty3-PROT chromo-unclass Ty3-PROT 1 0.0052

Tekay Ty3-RH Tekay Ty3-RH 1 0.0052

clusters connected through mates:

Cluster	Number of shared read pairs	k

604	3	0.0411
24	2	0.00172
737	2	0.0294
4790	2	0.0315
23700	2	0.0323
26600	2	0.0323
13	1	0.000677
46	1	0.00155
84	1	0.00279
86	1	0.00391
1290	1	0.0152
2440	1	0.0155
4320	1	0.0157
5260	1	0.0159
6530	1	0.0161
9280	1	0.016
9300	1	0.0163
12000	1	0.016
14300	1	0.016
25300	1	0.0161
26900	1	0.0161
32600	1	0.0161
45100	1	0.0161
51500	1	0.0161