Cluster no. 171

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Cluster is part of supercluster: 113

Cluster characteristics:

size 198
size_real 198
ecount 750
supercluster 113
annotations_summary 97.98% organelle/plastid
0.51% organelle/mitochondria
pair_completeness 0.8
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00505050505050505
satellite_probability 3.7950125041552e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 73
S1 68
S3 57
comparative analysis - number of edges between species:
S2 S1 S3
S2 118.0 86.0 83.5
S1 86.0 81.0 72.5
S3 83.5 72.5 67.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.070 0.937 0.977
S1 0.937 1.060 1.020
S3 0.977 1.020 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.0051
plastid plastid 194 0.9798

clusters connected through mates:

Cluster Number of shared
read pairs		 k
469 8 0.485
869 3 0.207
8 1 0.00171
35 1 0.000584
484 1 0.0571
12500 1 0.087